Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27775 and ABID97_RS27780 overlap by 4 nucleotides ABID97_RS27780 and ABID97_RS27785 are separated by 85 nucleotides ABID97_RS27785 and ABID97_RS27790 are separated by 108 nucleotides
ABID97_RS27775: ABID97_RS27775 - efflux RND transporter permease subunit, at 473,562 to 476,639
_RS27775
ABID97_RS27780: ABID97_RS27780 - efflux RND transporter periplasmic adaptor subunit, at 476,636 to 477,751
_RS27780
ABID97_RS27785: ABID97_RS27785 - TetR/AcrR family transcriptional regulator, at 477,837 to 478,454
_RS27785
ABID97_RS27790: ABID97_RS27790 - TolC family protein, at 478,563 to 480,038
_RS27790
Position (kb) 476
477
478 Strain fitness (log2 ratio) -1
0
1 at 476.068 kb on + strand, within ABID97_RS27775 at 476.300 kb on - strand, within ABID97_RS27775 at 476.377 kb on + strand at 476.377 kb on + strand at 476.377 kb on + strand at 476.395 kb on + strand at 476.396 kb on - strand at 476.979 kb on + strand, within ABID97_RS27780 at 477.337 kb on - strand, within ABID97_RS27780 at 477.932 kb on - strand, within ABID97_RS27785 at 477.949 kb on + strand, within ABID97_RS27785 at 477.949 kb on + strand, within ABID97_RS27785 at 477.950 kb on - strand, within ABID97_RS27785 at 477.950 kb on - strand, within ABID97_RS27785 at 478.105 kb on + strand, within ABID97_RS27785 at 478.106 kb on - strand, within ABID97_RS27785 at 478.288 kb on + strand, within ABID97_RS27785 at 478.288 kb on + strand, within ABID97_RS27785 at 478.289 kb on - strand, within ABID97_RS27785 at 478.289 kb on - strand, within ABID97_RS27785 at 478.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 476,068 + ABID97_RS27775 0.81 +0.1 476,300 - ABID97_RS27775 0.89 -0.4 476,377 + +0.1 476,377 + +0.1 476,377 + +0.2 476,395 + -0.1 476,396 - +0.0 476,979 + ABID97_RS27780 0.31 -1.0 477,337 - ABID97_RS27780 0.63 +0.2 477,932 - ABID97_RS27785 0.15 +0.2 477,949 + ABID97_RS27785 0.18 +0.1 477,949 + ABID97_RS27785 0.18 +0.2 477,950 - ABID97_RS27785 0.18 +0.1 477,950 - ABID97_RS27785 0.18 +0.0 478,105 + ABID97_RS27785 0.43 +0.4 478,106 - ABID97_RS27785 0.44 -0.1 478,288 + ABID97_RS27785 0.73 +0.0 478,288 + ABID97_RS27785 0.73 +0.1 478,289 - ABID97_RS27785 0.73 +0.4 478,289 - ABID97_RS27785 0.73 +0.3 478,645 - -0.4
Or see this region's nucleotide sequence