Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25340

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25335 and ABID97_RS25340 are separated by 17 nucleotidesABID97_RS25340 and ABID97_RS25345 overlap by 1 nucleotidesABID97_RS25345 and ABID97_RS25350 are separated by 90 nucleotides ABID97_RS25335: ABID97_RS25335 - FAD-binding oxidoreductase, at 5,249,081 to 5,250,454 _RS25335 ABID97_RS25340: ABID97_RS25340 - apolipoprotein N-acyltransferase, at 5,250,472 to 5,252,061 _RS25340 ABID97_RS25345: ABID97_RS25345 - transporter associated domain-containing protein, at 5,252,061 to 5,252,939 _RS25345 ABID97_RS25350: ABID97_RS25350 - GNAT family N-acetyltransferase, at 5,253,030 to 5,253,764 _RS25350 Position (kb) 5250 5251 5252 5253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5249.507 kb on + strand, within ABID97_RS25335at 5249.507 kb on + strand, within ABID97_RS25335at 5249.508 kb on - strand, within ABID97_RS25335at 5249.570 kb on + strand, within ABID97_RS25335at 5249.570 kb on + strand, within ABID97_RS25335at 5249.571 kb on - strand, within ABID97_RS25335at 5249.571 kb on - strand, within ABID97_RS25335at 5249.966 kb on + strand, within ABID97_RS25335at 5249.966 kb on + strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.985 kb on - strand, within ABID97_RS25335at 5250.090 kb on - strand, within ABID97_RS25335at 5250.863 kb on + strand, within ABID97_RS25340at 5251.022 kb on + strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.074 kb on - strand, within ABID97_RS25340at 5251.074 kb on - strand, within ABID97_RS25340at 5251.502 kb on + strand, within ABID97_RS25340at 5251.502 kb on + strand, within ABID97_RS25340at 5251.503 kb on - strand, within ABID97_RS25340at 5251.503 kb on - strand, within ABID97_RS25340at 5251.694 kb on + strand, within ABID97_RS25340at 5251.695 kb on - strand, within ABID97_RS25340at 5251.695 kb on - strand, within ABID97_RS25340at 5251.697 kb on + strand, within ABID97_RS25340at 5251.697 kb on + strand, within ABID97_RS25340at 5251.697 kb on + strand, within ABID97_RS25340at 5251.698 kb on - strand, within ABID97_RS25340at 5251.698 kb on - strand, within ABID97_RS25340at 5251.698 kb on - strand, within ABID97_RS25340at 5251.698 kb on - strand, within ABID97_RS25340at 5251.698 kb on - strand, within ABID97_RS25340at 5251.763 kb on + strand, within ABID97_RS25340at 5251.763 kb on + strand, within ABID97_RS25340at 5251.763 kb on + strand, within ABID97_RS25340at 5251.763 kb on + strand, within ABID97_RS25340at 5251.763 kb on + strand, within ABID97_RS25340at 5251.764 kb on - strand, within ABID97_RS25340at 5251.764 kb on - strand, within ABID97_RS25340at 5251.764 kb on - strand, within ABID97_RS25340at 5252.308 kb on + strand, within ABID97_RS25345at 5252.308 kb on + strand, within ABID97_RS25345at 5252.308 kb on + strand, within ABID97_RS25345at 5252.308 kb on + strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.309 kb on - strand, within ABID97_RS25345at 5252.623 kb on + strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.624 kb on - strand, within ABID97_RS25345at 5252.694 kb on + strand, within ABID97_RS25345at 5252.695 kb on - strand, within ABID97_RS25345at 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.951 kb on + strandat 5252.952 kb on - strandat 5252.952 kb on - strandat 5252.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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5,249,507 + ABID97_RS25335 0.31 -0.3
5,249,507 + ABID97_RS25335 0.31 +0.1
5,249,508 - ABID97_RS25335 0.31 -2.7
5,249,570 + ABID97_RS25335 0.36 -0.1
5,249,570 + ABID97_RS25335 0.36 +0.2
5,249,571 - ABID97_RS25335 0.36 +1.0
5,249,571 - ABID97_RS25335 0.36 +0.2
5,249,966 + ABID97_RS25335 0.64 +0.1
5,249,966 + ABID97_RS25335 0.64 +0.4
5,249,967 - ABID97_RS25335 0.64 -0.1
5,249,967 - ABID97_RS25335 0.64 +0.2
5,249,967 - ABID97_RS25335 0.64 -0.0
5,249,967 - ABID97_RS25335 0.64 +0.6
5,249,985 - ABID97_RS25335 0.66 +0.2
5,250,090 - ABID97_RS25335 0.73 -0.3
5,250,863 + ABID97_RS25340 0.25 -1.2
5,251,022 + ABID97_RS25340 0.35 -2.0
5,251,023 - ABID97_RS25340 0.35 -2.3
5,251,023 - ABID97_RS25340 0.35 +0.6
5,251,023 - ABID97_RS25340 0.35 -1.3
5,251,028 + ABID97_RS25340 0.35 -1.1
5,251,028 + ABID97_RS25340 0.35 -1.0
5,251,028 + ABID97_RS25340 0.35 -2.0
5,251,073 + ABID97_RS25340 0.38 -1.7
5,251,073 + ABID97_RS25340 0.38 +0.6
5,251,073 + ABID97_RS25340 0.38 -2.7
5,251,073 + ABID97_RS25340 0.38 -2.0
5,251,073 + ABID97_RS25340 0.38 -2.3
5,251,073 + ABID97_RS25340 0.38 -1.1
5,251,073 + ABID97_RS25340 0.38 -0.7
5,251,074 - ABID97_RS25340 0.38 -1.7
5,251,074 - ABID97_RS25340 0.38 -1.2
5,251,502 + ABID97_RS25340 0.65 -2.4
5,251,502 + ABID97_RS25340 0.65 -1.1
5,251,503 - ABID97_RS25340 0.65 -0.5
5,251,503 - ABID97_RS25340 0.65 +0.0
5,251,694 + ABID97_RS25340 0.77 -1.8
5,251,695 - ABID97_RS25340 0.77 -0.7
5,251,695 - ABID97_RS25340 0.77 -0.1
5,251,697 + ABID97_RS25340 0.77 -1.3
5,251,697 + ABID97_RS25340 0.77 -1.1
5,251,697 + ABID97_RS25340 0.77 -2.8
5,251,698 - ABID97_RS25340 0.77 -2.0
5,251,698 - ABID97_RS25340 0.77 -0.3
5,251,698 - ABID97_RS25340 0.77 -0.4
5,251,698 - ABID97_RS25340 0.77 -0.2
5,251,698 - ABID97_RS25340 0.77 -3.0
5,251,763 + ABID97_RS25340 0.81 +0.0
5,251,763 + ABID97_RS25340 0.81 -2.0
5,251,763 + ABID97_RS25340 0.81 -0.7
5,251,763 + ABID97_RS25340 0.81 +1.8
5,251,763 + ABID97_RS25340 0.81 -1.2
5,251,764 - ABID97_RS25340 0.81 -1.6
5,251,764 - ABID97_RS25340 0.81 +0.0
5,251,764 - ABID97_RS25340 0.81 +0.2
5,252,308 + ABID97_RS25345 0.28 -0.5
5,252,308 + ABID97_RS25345 0.28 -0.2
5,252,308 + ABID97_RS25345 0.28 -0.6
5,252,308 + ABID97_RS25345 0.28 -0.4
5,252,309 - ABID97_RS25345 0.28 -0.7
5,252,309 - ABID97_RS25345 0.28 -0.5
5,252,309 - ABID97_RS25345 0.28 -0.1
5,252,309 - ABID97_RS25345 0.28 -1.0
5,252,309 - ABID97_RS25345 0.28 -0.1
5,252,309 - ABID97_RS25345 0.28 +0.1
5,252,623 + ABID97_RS25345 0.64 -1.8
5,252,624 - ABID97_RS25345 0.64 -1.5
5,252,624 - ABID97_RS25345 0.64 -0.4
5,252,624 - ABID97_RS25345 0.64 -2.2
5,252,624 - ABID97_RS25345 0.64 -0.0
5,252,624 - ABID97_RS25345 0.64 +0.3
5,252,624 - ABID97_RS25345 0.64 -0.2
5,252,694 + ABID97_RS25345 0.72 -0.5
5,252,695 - ABID97_RS25345 0.72 +0.8
5,252,951 + -2.1
5,252,951 + -1.9
5,252,951 + -1.3
5,252,951 + -1.5
5,252,952 - -0.9
5,252,952 - -0.4
5,252,952 - -0.5

Or see this region's nucleotide sequence