Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22825

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22820 and ABID97_RS22825 are separated by 59 nucleotidesABID97_RS22825 and ABID97_RS22830 are separated by 63 nucleotides ABID97_RS22820: ABID97_RS22820 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 4,724,184 to 4,726,088 _RS22820 ABID97_RS22825: ABID97_RS22825 - ABC transporter ATP-binding protein, at 4,726,148 to 4,726,879 _RS22825 ABID97_RS22830: ABID97_RS22830 - phenylacetic acid degradation bifunctional protein PaaZ, at 4,726,943 to 4,728,997 _RS22830 Position (kb) 4726 4727Strain fitness (log2 ratio) -1 0 1at 4726.231 kb on - strand, within ABID97_RS22825at 4726.231 kb on - strand, within ABID97_RS22825at 4726.463 kb on + strand, within ABID97_RS22825at 4726.849 kb on + strandat 4726.850 kb on - strandat 4726.850 kb on - strandat 4726.853 kb on + strandat 4726.853 kb on + strandat 4726.853 kb on + strandat 4726.853 kb on + strandat 4726.853 kb on + strandat 4726.853 kb on + strandat 4726.854 kb on - strandat 4726.854 kb on - strandat 4726.964 kb on + strandat 4727.189 kb on + strand, within ABID97_RS22830at 4727.504 kb on + strand, within ABID97_RS22830at 4727.505 kb on - strand, within ABID97_RS22830at 4727.505 kb on - strand, within ABID97_RS22830at 4727.505 kb on - strand, within ABID97_RS22830

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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4,726,231 - ABID97_RS22825 0.11 -0.5
4,726,231 - ABID97_RS22825 0.11 -0.9
4,726,463 + ABID97_RS22825 0.43 -1.1
4,726,849 + -0.3
4,726,850 - +0.4
4,726,850 - -0.0
4,726,853 + -0.4
4,726,853 + +0.3
4,726,853 + -0.2
4,726,853 + +0.2
4,726,853 + -0.3
4,726,853 + -0.2
4,726,854 - -0.3
4,726,854 - -0.5
4,726,964 + +0.0
4,727,189 + ABID97_RS22830 0.12 -0.2
4,727,504 + ABID97_RS22830 0.27 -0.1
4,727,505 - ABID97_RS22830 0.27 +0.1
4,727,505 - ABID97_RS22830 0.27 +0.6
4,727,505 - ABID97_RS22830 0.27 +0.0

Or see this region's nucleotide sequence