Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19750 and ABID97_RS19755 are separated by 174 nucleotides ABID97_RS19755 and ABID97_RS19760 are separated by 13 nucleotides ABID97_RS19760 and ABID97_RS19765 overlap by 8 nucleotides ABID97_RS19765 and ABID97_RS19770 overlap by 1 nucleotides
ABID97_RS19750: ABID97_RS19750 - hypothetical protein, at 4,080,216 to 4,080,884
_RS19750
ABID97_RS19755: ABID97_RS19755 - hypothetical protein, at 4,081,059 to 4,081,577
_RS19755
ABID97_RS19760: ABID97_RS19760 - ROK family transcriptional regulator, at 4,081,591 to 4,082,826
_RS19760
ABID97_RS19765: ABID97_RS19765 - ATP-binding cassette domain-containing protein, at 4,082,819 to 4,083,625
_RS19765
ABID97_RS19770: ABID97_RS19770 - ABC transporter permease, at 4,083,625 to 4,084,584
_RS19770
Position (kb) 4081
4082
4083 Strain fitness (log2 ratio) -2
-1
0
1 at 4080.826 kb on + strand at 4080.999 kb on + strand at 4080.999 kb on + strand at 4081.000 kb on - strand at 4081.200 kb on + strand, within ABID97_RS19755 at 4081.201 kb on - strand, within ABID97_RS19755 at 4081.333 kb on - strand, within ABID97_RS19755 at 4081.495 kb on - strand, within ABID97_RS19755 at 4081.896 kb on - strand, within ABID97_RS19760 at 4082.077 kb on - strand, within ABID97_RS19760 at 4082.132 kb on + strand, within ABID97_RS19760 at 4082.132 kb on + strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.439 kb on - strand, within ABID97_RS19760
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,080,826 + +0.3 4,080,999 + -0.1 4,080,999 + -0.1 4,081,000 - -0.2 4,081,200 + ABID97_RS19755 0.27 +0.1 4,081,201 - ABID97_RS19755 0.27 -0.5 4,081,333 - ABID97_RS19755 0.53 +1.6 4,081,495 - ABID97_RS19755 0.84 -0.2 4,081,896 - ABID97_RS19760 0.25 -1.4 4,082,077 - ABID97_RS19760 0.39 -0.8 4,082,132 + ABID97_RS19760 0.44 -0.3 4,082,132 + ABID97_RS19760 0.44 -0.9 4,082,133 - ABID97_RS19760 0.44 -2.4 4,082,133 - ABID97_RS19760 0.44 -1.5 4,082,133 - ABID97_RS19760 0.44 -2.4 4,082,438 + ABID97_RS19760 0.69 -0.3 4,082,438 + ABID97_RS19760 0.69 -1.7 4,082,438 + ABID97_RS19760 0.69 -1.7 4,082,438 + ABID97_RS19760 0.69 -1.3 4,082,439 - ABID97_RS19760 0.69 -1.9
Or see this region's nucleotide sequence