Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13195

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13190 and ABID97_RS13195 are separated by 135 nucleotidesABID97_RS13195 and ABID97_RS13200 are separated by 19 nucleotidesABID97_RS13200 and ABID97_RS13205 are separated by 12 nucleotides ABID97_RS13190: ABID97_RS13190 - ABC transporter substrate-binding protein, at 2,747,301 to 2,748,479 _RS13190 ABID97_RS13195: ABID97_RS13195 - maleylacetate reductase, at 2,748,615 to 2,749,691 _RS13195 ABID97_RS13200: ABID97_RS13200 - intradiol ring-cleavage dioxygenase, at 2,749,711 to 2,750,559 _RS13200 ABID97_RS13205: ABID97_RS13205 - tripartite tricarboxylate transporter substrate binding protein, at 2,750,572 to 2,751,534 _RS13205 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -3 -2 -1 0 1at 2747.701 kb on + strand, within ABID97_RS13190at 2747.764 kb on + strand, within ABID97_RS13190at 2747.813 kb on - strand, within ABID97_RS13190at 2748.046 kb on + strand, within ABID97_RS13190at 2748.046 kb on + strand, within ABID97_RS13190at 2748.064 kb on + strand, within ABID97_RS13190at 2748.313 kb on + strand, within ABID97_RS13190at 2748.314 kb on - strand, within ABID97_RS13190at 2749.153 kb on + strand, within ABID97_RS13195at 2749.154 kb on - strand, within ABID97_RS13195at 2749.336 kb on + strand, within ABID97_RS13195at 2749.769 kb on + strandat 2749.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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2,747,701 + ABID97_RS13190 0.34 -1.3
2,747,764 + ABID97_RS13190 0.39 +0.1
2,747,813 - ABID97_RS13190 0.43 +0.5
2,748,046 + ABID97_RS13190 0.63 -0.3
2,748,046 + ABID97_RS13190 0.63 -0.3
2,748,064 + ABID97_RS13190 0.65 -0.1
2,748,313 + ABID97_RS13190 0.86 -0.5
2,748,314 - ABID97_RS13190 0.86 +0.2
2,749,153 + ABID97_RS13195 0.50 +0.2
2,749,154 - ABID97_RS13195 0.50 -1.9
2,749,336 + ABID97_RS13195 0.67 -0.2
2,749,769 + -3.0
2,749,769 + -0.2

Or see this region's nucleotide sequence