Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11665 and ABID97_RS11670 overlap by 8 nucleotides ABID97_RS11670 and ABID97_RS11675 are separated by 8 nucleotides ABID97_RS11675 and ABID97_RS11680 overlap by 101 nucleotides ABID97_RS11680 and ABID97_RS11685 overlap by 4 nucleotides
ABID97_RS11665: ABID97_RS11665 - ABC transporter permease, at 2,410,493 to 2,411,440
_RS11665
ABID97_RS11670: ABID97_RS11670 - ABC transporter permease, at 2,411,433 to 2,412,329
_RS11670
ABID97_RS11675: ABID97_RS11675 - ABC transporter ATP-binding protein, at 2,412,338 to 2,413,291
_RS11675
ABID97_RS11680: ABID97_RS11680 - ATP-binding cassette domain-containing protein, at 2,413,191 to 2,413,991
_RS11680
ABID97_RS11685: ABID97_RS11685 - M20/M25/M40 family metallo-hydrolase, at 2,413,988 to 2,415,205
_RS11685
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-2
-1
0
1 at 2411.399 kb on - strand at 2411.441 kb on + strand at 2411.441 kb on + strand at 2412.045 kb on + strand, within ABID97_RS11670 at 2412.046 kb on - strand, within ABID97_RS11670 at 2412.565 kb on - strand, within ABID97_RS11675 at 2412.638 kb on - strand, within ABID97_RS11675 at 2412.965 kb on + strand, within ABID97_RS11675 at 2412.965 kb on + strand, within ABID97_RS11675 at 2412.965 kb on + strand, within ABID97_RS11675 at 2412.966 kb on - strand, within ABID97_RS11675 at 2413.197 kb on + strand at 2413.582 kb on + strand, within ABID97_RS11680 at 2413.782 kb on + strand, within ABID97_RS11680 at 2414.105 kb on + strand at 2414.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 2,411,399 - -0.1 2,411,441 + +0.5 2,411,441 + -0.1 2,412,045 + ABID97_RS11670 0.68 -0.2 2,412,046 - ABID97_RS11670 0.68 -0.1 2,412,565 - ABID97_RS11675 0.24 +0.2 2,412,638 - ABID97_RS11675 0.31 -1.3 2,412,965 + ABID97_RS11675 0.66 +0.2 2,412,965 + ABID97_RS11675 0.66 -0.0 2,412,965 + ABID97_RS11675 0.66 -0.8 2,412,966 - ABID97_RS11675 0.66 -0.3 2,413,197 + +0.4 2,413,582 + ABID97_RS11680 0.49 +0.2 2,413,782 + ABID97_RS11680 0.74 -1.9 2,414,105 + -0.1 2,414,106 - +0.2
Or see this region's nucleotide sequence