Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07615

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07605 and ABID97_RS07610 are separated by 99 nucleotidesABID97_RS07610 and ABID97_RS07615 overlap by 17 nucleotidesABID97_RS07615 and ABID97_RS07620 overlap by 17 nucleotidesABID97_RS07620 and ABID97_RS07625 overlap by 4 nucleotides ABID97_RS07605: ABID97_RS07605 - hemolysin III family protein, at 1,606,777 to 1,607,445 _RS07605 ABID97_RS07610: ABID97_RS07610 - response regulator transcription factor, at 1,607,545 to 1,608,099 _RS07610 ABID97_RS07615: ABID97_RS07615 - ATP-binding protein, at 1,608,083 to 1,609,492 _RS07615 ABID97_RS07620: ABID97_RS07620 - SURF1 family protein, at 1,609,476 to 1,610,318 _RS07620 ABID97_RS07625: ABID97_RS07625 - cytochrome o ubiquinol oxidase subunit IV, at 1,610,315 to 1,610,722 _RS07625 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -1 0 1at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.162 kb on + strand, within ABID97_RS07605at 1607.162 kb on + strand, within ABID97_RS07605at 1607.225 kb on + strand, within ABID97_RS07605at 1607.225 kb on + strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.244 kb on - strand, within ABID97_RS07605at 1607.318 kb on + strand, within ABID97_RS07605at 1607.546 kb on + strandat 1607.546 kb on + strandat 1608.003 kb on - strand, within ABID97_RS07610at 1608.321 kb on + strand, within ABID97_RS07615at 1608.322 kb on - strand, within ABID97_RS07615at 1608.966 kb on + strand, within ABID97_RS07615at 1608.966 kb on + strand, within ABID97_RS07615at 1609.120 kb on - strand, within ABID97_RS07615at 1609.158 kb on + strand, within ABID97_RS07615at 1609.158 kb on + strand, within ABID97_RS07615at 1609.616 kb on - strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.718 kb on - strand, within ABID97_RS07620at 1610.047 kb on - strand, within ABID97_RS07620at 1610.047 kb on - strand, within ABID97_RS07620at 1610.186 kb on + strand, within ABID97_RS07620at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.481 kb on + strand, within ABID97_RS07625at 1610.481 kb on + strand, within ABID97_RS07625at 1610.481 kb on + strand, within ABID97_RS07625

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,607,141 + ABID97_RS07605 0.54 +0.0
1,607,141 + ABID97_RS07605 0.54 -0.8
1,607,141 + ABID97_RS07605 0.54 +0.3
1,607,141 + ABID97_RS07605 0.54 -0.9
1,607,141 + ABID97_RS07605 0.54 +0.2
1,607,141 + ABID97_RS07605 0.54 +0.7
1,607,142 - ABID97_RS07605 0.55 +0.0
1,607,142 - ABID97_RS07605 0.55 +0.1
1,607,142 - ABID97_RS07605 0.55 +0.3
1,607,162 + ABID97_RS07605 0.58 +0.2
1,607,162 + ABID97_RS07605 0.58 -0.1
1,607,225 + ABID97_RS07605 0.67 -0.2
1,607,225 + ABID97_RS07605 0.67 -0.1
1,607,226 - ABID97_RS07605 0.67 -0.1
1,607,226 - ABID97_RS07605 0.67 -0.3
1,607,226 - ABID97_RS07605 0.67 +0.1
1,607,244 - ABID97_RS07605 0.70 -0.0
1,607,318 + ABID97_RS07605 0.81 +0.2
1,607,546 + +0.5
1,607,546 + +0.5
1,608,003 - ABID97_RS07610 0.83 -0.6
1,608,321 + ABID97_RS07615 0.17 -0.6
1,608,322 - ABID97_RS07615 0.17 +0.8
1,608,966 + ABID97_RS07615 0.63 -1.0
1,608,966 + ABID97_RS07615 0.63 +0.5
1,609,120 - ABID97_RS07615 0.74 -0.2
1,609,158 + ABID97_RS07615 0.76 -1.1
1,609,158 + ABID97_RS07615 0.76 -1.1
1,609,616 - ABID97_RS07620 0.17 +0.4
1,609,717 + ABID97_RS07620 0.29 +0.5
1,609,717 + ABID97_RS07620 0.29 -0.1
1,609,717 + ABID97_RS07620 0.29 +0.4
1,609,718 - ABID97_RS07620 0.29 -0.4
1,610,047 - ABID97_RS07620 0.68 +0.3
1,610,047 - ABID97_RS07620 0.68 -0.7
1,610,186 + ABID97_RS07620 0.84 +1.2
1,610,373 + ABID97_RS07625 0.14 -0.2
1,610,373 + ABID97_RS07625 0.14 -0.2
1,610,373 + ABID97_RS07625 0.14 +0.1
1,610,373 + ABID97_RS07625 0.14 +0.4
1,610,481 + ABID97_RS07625 0.41 -0.6
1,610,481 + ABID97_RS07625 0.41 -0.2
1,610,481 + ABID97_RS07625 0.41 -1.0

Or see this region's nucleotide sequence