Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04030 and ABID97_RS04035 overlap by 4 nucleotides ABID97_RS04035 and ABID97_RS04040 overlap by 4 nucleotides ABID97_RS04040 and ABID97_RS04045 are separated by 0 nucleotides
ABID97_RS04030: ABID97_RS04030 - FAD-binding oxidoreductase, at 826,853 to 827,983
_RS04030
ABID97_RS04035: ABID97_RS04035 - NAD(P)/FAD-dependent oxidoreductase, at 827,980 to 829,398
_RS04035
ABID97_RS04040: ABID97_RS04040 - (2Fe-2S)-binding protein, at 829,395 to 829,700
_RS04040
ABID97_RS04045: ABID97_RS04045 - ABC transporter permease, at 829,701 to 830,495
_RS04045
Position (kb) 827
828
829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 827.232 kb on + strand, within ABID97_RS04030 at 827.232 kb on + strand, within ABID97_RS04030 at 827.233 kb on - strand, within ABID97_RS04030 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.882 kb on - strand, within ABID97_RS04035 at 828.893 kb on + strand, within ABID97_RS04035 at 828.894 kb on - strand, within ABID97_RS04035 at 828.984 kb on - strand, within ABID97_RS04035 at 829.058 kb on + strand, within ABID97_RS04035 at 829.215 kb on - strand, within ABID97_RS04035 at 829.683 kb on + strand at 829.703 kb on - strand at 829.735 kb on + strand at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.835 kb on - strand, within ABID97_RS04045 at 830.066 kb on - strand, within ABID97_RS04045
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 827,232 + ABID97_RS04030 0.34 -1.3 827,232 + ABID97_RS04030 0.34 -1.5 827,233 - ABID97_RS04030 0.34 -1.6 828,759 - ABID97_RS04035 0.55 -0.7 828,759 - ABID97_RS04035 0.55 -1.5 828,759 - ABID97_RS04035 0.55 -0.8 828,759 - ABID97_RS04035 0.55 -1.7 828,762 - ABID97_RS04035 0.55 -0.7 828,762 - ABID97_RS04035 0.55 -1.6 828,882 - ABID97_RS04035 0.64 -0.1 828,893 + ABID97_RS04035 0.64 -1.1 828,894 - ABID97_RS04035 0.64 -1.1 828,984 - ABID97_RS04035 0.71 -1.3 829,058 + ABID97_RS04035 0.76 -1.3 829,215 - ABID97_RS04035 0.87 -2.4 829,683 + -0.4 829,703 - -0.4 829,735 + +0.1 829,828 + ABID97_RS04045 0.16 -0.1 829,828 + ABID97_RS04045 0.16 +0.0 829,828 + ABID97_RS04045 0.16 +0.1 829,828 + ABID97_RS04045 0.16 -0.1 829,828 + ABID97_RS04045 0.16 +0.2 829,828 + ABID97_RS04045 0.16 -0.1 829,829 - ABID97_RS04045 0.16 +0.6 829,829 - ABID97_RS04045 0.16 -0.0 829,829 - ABID97_RS04045 0.16 -0.1 829,829 - ABID97_RS04045 0.16 +0.6 829,829 - ABID97_RS04045 0.16 +0.2 829,829 - ABID97_RS04045 0.16 +0.0 829,834 + ABID97_RS04045 0.17 +0.7 829,834 + ABID97_RS04045 0.17 -0.2 829,834 + ABID97_RS04045 0.17 -0.6 829,834 + ABID97_RS04045 0.17 +0.1 829,834 + ABID97_RS04045 0.17 +0.4 829,834 + ABID97_RS04045 0.17 +1.2 829,835 - ABID97_RS04045 0.17 +0.7 830,066 - ABID97_RS04045 0.46 -0.0
Or see this region's nucleotide sequence