Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01860 and ABID97_RS01865 are separated by 186 nucleotides ABID97_RS01865 and ABID97_RS01870 are separated by 23 nucleotides ABID97_RS01870 and ABID97_RS01875 are separated by 150 nucleotides ABID97_RS01875 and ABID97_RS01880 overlap by 10 nucleotides
ABID97_RS01860: ABID97_RS01860 - indolepyruvate ferredoxin oxidoreductase family protein, at 365,413 to 369,021
_RS01860
ABID97_RS01865: ABID97_RS01865 - Lrp/AsnC family transcriptional regulator, at 369,208 to 369,687
_RS01865
ABID97_RS01870: ABID97_RS01870 - MFS transporter, at 369,711 to 371,339
_RS01870
ABID97_RS01875: ABID97_RS01875 - creatininase family protein, at 371,490 to 372,311
_RS01875
ABID97_RS01880: ABID97_RS01880 - ABC transporter ATP-binding protein, at 372,302 to 373,096
_RS01880
Position (kb) 369
370
371
372 Strain fitness (log2 ratio) -1
0
1
2
3 at 368.720 kb on - strand at 368.813 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.958 kb on - strand at 368.958 kb on - strand at 368.958 kb on - strand at 368.958 kb on - strand at 369.021 kb on + strand at 369.021 kb on + strand at 369.021 kb on + strand at 369.022 kb on - strand at 369.125 kb on - strand at 369.199 kb on + strand at 369.365 kb on - strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.685 kb on + strand at 369.686 kb on - strand at 369.686 kb on - strand at 370.397 kb on - strand, within ABID97_RS01870 at 370.813 kb on - strand, within ABID97_RS01870 at 370.813 kb on - strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.065 kb on - strand, within ABID97_RS01870 at 371.187 kb on + strand at 371.188 kb on - strand at 371.188 kb on - strand at 371.406 kb on - strand at 371.409 kb on + strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.445 kb on - strand at 371.481 kb on + strand at 371.844 kb on + strand, within ABID97_RS01875 at 371.844 kb on + strand, within ABID97_RS01875 at 371.844 kb on + strand, within ABID97_RS01875 at 371.845 kb on - strand, within ABID97_RS01875 at 371.938 kb on - strand, within ABID97_RS01875 at 372.042 kb on + strand, within ABID97_RS01875 at 372.042 kb on + strand, within ABID97_RS01875 at 372.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 368,720 - -0.6 368,813 + -0.0 368,957 + -0.3 368,957 + -0.1 368,957 + +0.4 368,957 + +0.2 368,958 - -0.2 368,958 - +1.3 368,958 - -0.4 368,958 - -0.1 369,021 + +0.1 369,021 + -0.1 369,021 + -0.3 369,022 - -0.1 369,125 - -0.5 369,199 + +0.1 369,365 - ABID97_RS01865 0.33 -0.1 369,505 + ABID97_RS01865 0.62 +0.2 369,505 + ABID97_RS01865 0.62 +0.4 369,505 + ABID97_RS01865 0.62 +0.6 369,506 - ABID97_RS01865 0.62 +0.6 369,506 - ABID97_RS01865 0.62 +0.3 369,506 - ABID97_RS01865 0.62 +0.2 369,506 - ABID97_RS01865 0.62 +0.1 369,506 - ABID97_RS01865 0.62 +0.3 369,685 + -0.0 369,686 - -0.1 369,686 - +0.1 370,397 - ABID97_RS01870 0.42 +0.2 370,813 - ABID97_RS01870 0.68 +0.1 370,813 - ABID97_RS01870 0.68 -0.1 371,064 + ABID97_RS01870 0.83 +0.0 371,064 + ABID97_RS01870 0.83 -0.3 371,064 + ABID97_RS01870 0.83 -1.0 371,064 + ABID97_RS01870 0.83 -0.9 371,065 - ABID97_RS01870 0.83 -0.4 371,187 + -0.2 371,188 - -0.2 371,188 - +3.1 371,406 - -0.3 371,409 + -0.7 371,410 - -0.0 371,410 - -0.4 371,410 - -0.0 371,410 - -0.1 371,445 - -0.4 371,481 + -0.2 371,844 + ABID97_RS01875 0.43 -0.3 371,844 + ABID97_RS01875 0.43 -0.1 371,844 + ABID97_RS01875 0.43 +0.5 371,845 - ABID97_RS01875 0.43 +0.0 371,938 - ABID97_RS01875 0.55 +0.5 372,042 + ABID97_RS01875 0.67 +0.3 372,042 + ABID97_RS01875 0.67 +1.0 372,248 - +0.3
Or see this region's nucleotide sequence