Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01850 and ABID97_RS01855 are separated by 82 nucleotides ABID97_RS01855 and ABID97_RS01860 are separated by 272 nucleotides ABID97_RS01860 and ABID97_RS01865 are separated by 186 nucleotides ABID97_RS01865 and ABID97_RS01870 are separated by 23 nucleotides
ABID97_RS01850: ABID97_RS01850 - protein translocase subunit SecD, at 362,839 to 364,722
_RS01850
ABID97_RS01855: ABID97_RS01855 - preprotein translocase subunit YajC, at 364,805 to 365,140
_RS01855
ABID97_RS01860: ABID97_RS01860 - indolepyruvate ferredoxin oxidoreductase family protein, at 365,413 to 369,021
_RS01860
ABID97_RS01865: ABID97_RS01865 - Lrp/AsnC family transcriptional regulator, at 369,208 to 369,687
_RS01865
ABID97_RS01870: ABID97_RS01870 - MFS transporter, at 369,711 to 371,339
_RS01870
Position (kb) 365
366
367
368
369
370 Strain fitness (log2 ratio) -1
0
1
2
3 at 364.807 kb on - strand at 365.029 kb on - strand, within ABID97_RS01855 at 365.268 kb on + strand at 365.268 kb on + strand at 365.268 kb on + strand at 365.268 kb on + strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.298 kb on + strand at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.892 kb on - strand, within ABID97_RS01860 at 365.903 kb on + strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.925 kb on - strand, within ABID97_RS01860 at 366.014 kb on + strand, within ABID97_RS01860 at 366.014 kb on + strand, within ABID97_RS01860 at 366.015 kb on - strand, within ABID97_RS01860 at 366.284 kb on + strand, within ABID97_RS01860 at 366.285 kb on - strand, within ABID97_RS01860 at 366.285 kb on - strand, within ABID97_RS01860 at 366.285 kb on - strand, within ABID97_RS01860 at 367.089 kb on - strand, within ABID97_RS01860 at 367.089 kb on - strand, within ABID97_RS01860 at 367.089 kb on - strand, within ABID97_RS01860 at 367.089 kb on - strand, within ABID97_RS01860 at 367.196 kb on + strand, within ABID97_RS01860 at 367.197 kb on - strand, within ABID97_RS01860 at 367.197 kb on - strand, within ABID97_RS01860 at 367.334 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.346 kb on + strand, within ABID97_RS01860 at 367.347 kb on - strand, within ABID97_RS01860 at 367.347 kb on - strand, within ABID97_RS01860 at 367.347 kb on - strand, within ABID97_RS01860 at 367.347 kb on - strand, within ABID97_RS01860 at 367.406 kb on + strand, within ABID97_RS01860 at 367.407 kb on - strand, within ABID97_RS01860 at 367.925 kb on + strand, within ABID97_RS01860 at 367.925 kb on + strand, within ABID97_RS01860 at 367.926 kb on - strand, within ABID97_RS01860 at 367.926 kb on - strand, within ABID97_RS01860 at 367.926 kb on - strand, within ABID97_RS01860 at 367.926 kb on - strand, within ABID97_RS01860 at 367.946 kb on + strand, within ABID97_RS01860 at 367.947 kb on - strand, within ABID97_RS01860 at 368.126 kb on + strand, within ABID97_RS01860 at 368.126 kb on + strand, within ABID97_RS01860 at 368.126 kb on + strand, within ABID97_RS01860 at 368.126 kb on + strand, within ABID97_RS01860 at 368.127 kb on - strand, within ABID97_RS01860 at 368.127 kb on - strand, within ABID97_RS01860 at 368.207 kb on + strand, within ABID97_RS01860 at 368.207 kb on + strand, within ABID97_RS01860 at 368.208 kb on - strand, within ABID97_RS01860 at 368.208 kb on - strand, within ABID97_RS01860 at 368.208 kb on - strand, within ABID97_RS01860 at 368.208 kb on - strand, within ABID97_RS01860 at 368.223 kb on - strand, within ABID97_RS01860 at 368.231 kb on + strand, within ABID97_RS01860 at 368.231 kb on + strand, within ABID97_RS01860 at 368.648 kb on + strand, within ABID97_RS01860 at 368.649 kb on - strand, within ABID97_RS01860 at 368.720 kb on - strand at 368.813 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.957 kb on + strand at 368.958 kb on - strand at 368.958 kb on - strand at 368.958 kb on - strand at 368.958 kb on - strand at 369.021 kb on + strand at 369.021 kb on + strand at 369.021 kb on + strand at 369.022 kb on - strand at 369.125 kb on - strand at 369.199 kb on + strand at 369.365 kb on - strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.505 kb on + strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.506 kb on - strand, within ABID97_RS01865 at 369.685 kb on + strand at 369.686 kb on - strand at 369.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 364,807 - -0.4 365,029 - ABID97_RS01855 0.67 +0.6 365,268 + -0.0 365,268 + +0.3 365,268 + +0.5 365,268 + +0.2 365,269 - -0.1 365,269 - -1.2 365,269 - +0.2 365,269 - +0.9 365,269 - +0.0 365,298 + +0.3 365,798 + ABID97_RS01860 0.11 +0.3 365,798 + ABID97_RS01860 0.11 +0.1 365,798 + ABID97_RS01860 0.11 -0.9 365,798 + ABID97_RS01860 0.11 +0.8 365,799 - ABID97_RS01860 0.11 +0.0 365,799 - ABID97_RS01860 0.11 -0.1 365,799 - ABID97_RS01860 0.11 +0.0 365,799 - ABID97_RS01860 0.11 +0.2 365,892 - ABID97_RS01860 0.13 -0.2 365,903 + ABID97_RS01860 0.14 -0.1 365,904 - ABID97_RS01860 0.14 -0.1 365,904 - ABID97_RS01860 0.14 -0.3 365,904 - ABID97_RS01860 0.14 +0.2 365,925 - ABID97_RS01860 0.14 +0.1 366,014 + ABID97_RS01860 0.17 -0.1 366,014 + ABID97_RS01860 0.17 -0.1 366,015 - ABID97_RS01860 0.17 +0.5 366,284 + ABID97_RS01860 0.24 -0.2 366,285 - ABID97_RS01860 0.24 -0.3 366,285 - ABID97_RS01860 0.24 +2.8 366,285 - ABID97_RS01860 0.24 -1.1 367,089 - ABID97_RS01860 0.46 -0.2 367,089 - ABID97_RS01860 0.46 -0.3 367,089 - ABID97_RS01860 0.46 -0.3 367,089 - ABID97_RS01860 0.46 -0.3 367,196 + ABID97_RS01860 0.49 -0.0 367,197 - ABID97_RS01860 0.49 +0.2 367,197 - ABID97_RS01860 0.49 -0.1 367,334 + ABID97_RS01860 0.53 +0.0 367,346 + ABID97_RS01860 0.54 +0.4 367,346 + ABID97_RS01860 0.54 +0.1 367,346 + ABID97_RS01860 0.54 -0.1 367,346 + ABID97_RS01860 0.54 +0.1 367,346 + ABID97_RS01860 0.54 +0.1 367,346 + ABID97_RS01860 0.54 -0.2 367,347 - ABID97_RS01860 0.54 +0.2 367,347 - ABID97_RS01860 0.54 -0.8 367,347 - ABID97_RS01860 0.54 +0.1 367,347 - ABID97_RS01860 0.54 -0.0 367,406 + ABID97_RS01860 0.55 -0.1 367,407 - ABID97_RS01860 0.55 +0.2 367,925 + ABID97_RS01860 0.70 +0.2 367,925 + ABID97_RS01860 0.70 -0.0 367,926 - ABID97_RS01860 0.70 -0.1 367,926 - ABID97_RS01860 0.70 +0.2 367,926 - ABID97_RS01860 0.70 -0.5 367,926 - ABID97_RS01860 0.70 +0.4 367,946 + ABID97_RS01860 0.70 +0.4 367,947 - ABID97_RS01860 0.70 +0.0 368,126 + ABID97_RS01860 0.75 +0.2 368,126 + ABID97_RS01860 0.75 +0.2 368,126 + ABID97_RS01860 0.75 +0.1 368,126 + ABID97_RS01860 0.75 -0.9 368,127 - ABID97_RS01860 0.75 -0.6 368,127 - ABID97_RS01860 0.75 -0.0 368,207 + ABID97_RS01860 0.77 +0.4 368,207 + ABID97_RS01860 0.77 -0.6 368,208 - ABID97_RS01860 0.77 +0.2 368,208 - ABID97_RS01860 0.77 -0.1 368,208 - ABID97_RS01860 0.77 -0.4 368,208 - ABID97_RS01860 0.77 +0.0 368,223 - ABID97_RS01860 0.78 -0.1 368,231 + ABID97_RS01860 0.78 -0.0 368,231 + ABID97_RS01860 0.78 -0.0 368,648 + ABID97_RS01860 0.90 -0.4 368,649 - ABID97_RS01860 0.90 -0.1 368,720 - -0.6 368,813 + -0.0 368,957 + -0.3 368,957 + -0.1 368,957 + +0.4 368,957 + +0.2 368,958 - -0.2 368,958 - +1.3 368,958 - -0.4 368,958 - -0.1 369,021 + +0.1 369,021 + -0.1 369,021 + -0.3 369,022 - -0.1 369,125 - -0.5 369,199 + +0.1 369,365 - ABID97_RS01865 0.33 -0.1 369,505 + ABID97_RS01865 0.62 +0.2 369,505 + ABID97_RS01865 0.62 +0.4 369,505 + ABID97_RS01865 0.62 +0.6 369,506 - ABID97_RS01865 0.62 +0.6 369,506 - ABID97_RS01865 0.62 +0.3 369,506 - ABID97_RS01865 0.62 +0.2 369,506 - ABID97_RS01865 0.62 +0.1 369,506 - ABID97_RS01865 0.62 +0.3 369,685 + -0.0 369,686 - -0.1 369,686 - +0.1
Or see this region's nucleotide sequence