Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1113 and PfGW456L13_1114 are separated by 193 nucleotides PfGW456L13_1114 and PfGW456L13_1115 are separated by 132 nucleotides
PfGW456L13_1113 - Probable short-chain dehydrogenase, at 1,235,147 to 1,235,971
_1113
PfGW456L13_1114 - L-threonine aldolase (EC 4.1.2.5) <small>(from data)</small>, at 1,236,165 to 1,237,205
_1114
PfGW456L13_1115 - Membrane protein, putative, at 1,237,338 to 1,238,078
_1115
Position (kb) 1236
1237
1238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1235.472 kb on + strand, within PfGW456L13_1113 at 1235.486 kb on - strand, within PfGW456L13_1113 at 1235.486 kb on - strand, within PfGW456L13_1113 at 1235.486 kb on - strand, within PfGW456L13_1113 at 1235.487 kb on + strand, within PfGW456L13_1113 at 1235.487 kb on + strand, within PfGW456L13_1113 at 1235.488 kb on - strand, within PfGW456L13_1113 at 1235.488 kb on - strand, within PfGW456L13_1113 at 1235.488 kb on - strand, within PfGW456L13_1113 at 1235.496 kb on + strand, within PfGW456L13_1113 at 1235.496 kb on + strand, within PfGW456L13_1113 at 1235.497 kb on - strand, within PfGW456L13_1113 at 1235.497 kb on - strand, within PfGW456L13_1113 at 1235.497 kb on - strand, within PfGW456L13_1113 at 1235.497 kb on - strand, within PfGW456L13_1113 at 1235.600 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.702 kb on + strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.703 kb on - strand, within PfGW456L13_1113 at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.975 kb on + strand at 1235.976 kb on - strand at 1235.976 kb on - strand at 1235.987 kb on + strand at 1235.988 kb on - strand at 1235.988 kb on - strand at 1235.988 kb on - strand at 1235.988 kb on - strand at 1235.993 kb on + strand at 1235.993 kb on + strand at 1235.994 kb on - strand at 1236.021 kb on + strand at 1236.021 kb on + strand at 1236.021 kb on + strand at 1236.022 kb on - strand at 1236.022 kb on - strand at 1236.047 kb on - strand at 1236.047 kb on - strand at 1236.047 kb on - strand at 1236.047 kb on - strand at 1236.158 kb on + strand at 1236.158 kb on + strand at 1236.159 kb on - strand at 1236.159 kb on - strand at 1236.166 kb on + strand at 1236.272 kb on - strand, within PfGW456L13_1114 at 1236.427 kb on + strand, within PfGW456L13_1114 at 1236.427 kb on + strand, within PfGW456L13_1114 at 1236.428 kb on - strand, within PfGW456L13_1114 at 1236.428 kb on - strand, within PfGW456L13_1114 at 1236.752 kb on - strand, within PfGW456L13_1114 at 1236.752 kb on - strand, within PfGW456L13_1114 at 1236.970 kb on + strand, within PfGW456L13_1114 at 1236.970 kb on + strand, within PfGW456L13_1114 at 1236.970 kb on + strand, within PfGW456L13_1114 at 1236.971 kb on - strand, within PfGW456L13_1114 at 1236.971 kb on - strand, within PfGW456L13_1114 at 1237.168 kb on + strand at 1237.168 kb on + strand at 1237.168 kb on + strand at 1237.168 kb on + strand at 1237.168 kb on + strand at 1237.169 kb on - strand at 1237.169 kb on - strand at 1237.169 kb on - strand at 1237.231 kb on + strand at 1237.231 kb on + strand at 1237.232 kb on - strand at 1237.270 kb on + strand at 1237.270 kb on + strand at 1237.271 kb on - strand at 1237.271 kb on - strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.318 kb on + strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.319 kb on - strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.337 kb on + strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.338 kb on - strand at 1237.417 kb on + strand, within PfGW456L13_1115 at 1237.417 kb on + strand, within PfGW456L13_1115 at 1237.417 kb on + strand, within PfGW456L13_1115 at 1237.418 kb on - strand, within PfGW456L13_1115 at 1237.443 kb on + strand, within PfGW456L13_1115 at 1237.443 kb on + strand, within PfGW456L13_1115 at 1237.443 kb on + strand, within PfGW456L13_1115 at 1237.444 kb on - strand, within PfGW456L13_1115 at 1237.444 kb on - strand, within PfGW456L13_1115 at 1237.444 kb on - strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.470 kb on + strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.471 kb on - strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.620 kb on + strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.621 kb on - strand, within PfGW456L13_1115 at 1237.813 kb on + strand, within PfGW456L13_1115 at 1237.830 kb on + strand, within PfGW456L13_1115 at 1237.830 kb on + strand, within PfGW456L13_1115 at 1237.855 kb on + strand, within PfGW456L13_1115 at 1237.855 kb on + strand, within PfGW456L13_1115 at 1237.856 kb on - strand, within PfGW456L13_1115 at 1237.888 kb on - strand, within PfGW456L13_1115 at 1237.888 kb on - strand, within PfGW456L13_1115 at 1237.888 kb on - strand, within PfGW456L13_1115 at 1237.888 kb on - strand, within PfGW456L13_1115 at 1237.890 kb on + strand, within PfGW456L13_1115 at 1237.890 kb on + strand, within PfGW456L13_1115 at 1237.890 kb on + strand, within PfGW456L13_1115 at 1237.890 kb on + strand, within PfGW456L13_1115 at 1237.891 kb on - strand, within PfGW456L13_1115 at 1237.891 kb on - strand, within PfGW456L13_1115 at 1237.891 kb on - strand, within PfGW456L13_1115 at 1238.019 kb on + strand at 1238.028 kb on + strand at 1238.029 kb on - strand at 1238.139 kb on - strand at 1238.139 kb on - strand at 1238.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 1,235,472 + PfGW456L13_1113 0.39 +1.0 1,235,486 - PfGW456L13_1113 0.41 +0.3 1,235,486 - PfGW456L13_1113 0.41 +0.1 1,235,486 - PfGW456L13_1113 0.41 +0.8 1,235,487 + PfGW456L13_1113 0.41 -0.3 1,235,487 + PfGW456L13_1113 0.41 -0.3 1,235,488 - PfGW456L13_1113 0.41 +0.8 1,235,488 - PfGW456L13_1113 0.41 -0.3 1,235,488 - PfGW456L13_1113 0.41 +0.7 1,235,496 + PfGW456L13_1113 0.42 -1.2 1,235,496 + PfGW456L13_1113 0.42 +0.3 1,235,497 - PfGW456L13_1113 0.42 +1.3 1,235,497 - PfGW456L13_1113 0.42 +0.5 1,235,497 - PfGW456L13_1113 0.42 +0.4 1,235,497 - PfGW456L13_1113 0.42 -0.3 1,235,600 + PfGW456L13_1113 0.55 -0.6 1,235,702 + PfGW456L13_1113 0.67 -1.0 1,235,702 + PfGW456L13_1113 0.67 +1.1 1,235,702 + PfGW456L13_1113 0.67 +0.4 1,235,702 + PfGW456L13_1113 0.67 -1.3 1,235,702 + PfGW456L13_1113 0.67 -0.2 1,235,702 + PfGW456L13_1113 0.67 -0.3 1,235,702 + PfGW456L13_1113 0.67 +0.3 1,235,702 + PfGW456L13_1113 0.67 -1.3 1,235,702 + PfGW456L13_1113 0.67 -1.9 1,235,702 + PfGW456L13_1113 0.67 +0.1 1,235,703 - PfGW456L13_1113 0.67 +0.7 1,235,703 - PfGW456L13_1113 0.67 +1.2 1,235,703 - PfGW456L13_1113 0.67 -0.8 1,235,703 - PfGW456L13_1113 0.67 +0.9 1,235,703 - PfGW456L13_1113 0.67 +0.4 1,235,703 - PfGW456L13_1113 0.67 +1.7 1,235,703 - PfGW456L13_1113 0.67 +1.5 1,235,703 - PfGW456L13_1113 0.67 +0.1 1,235,703 - PfGW456L13_1113 0.67 +0.6 1,235,703 - PfGW456L13_1113 0.67 +1.5 1,235,703 - PfGW456L13_1113 0.67 +2.1 1,235,975 + +0.7 1,235,975 + -0.2 1,235,975 + -0.9 1,235,975 + -2.8 1,235,975 + -0.3 1,235,975 + -0.8 1,235,975 + +0.5 1,235,976 - +1.5 1,235,976 - +1.2 1,235,987 + +0.3 1,235,988 - +0.8 1,235,988 - +1.1 1,235,988 - -1.6 1,235,988 - +0.2 1,235,993 + -0.4 1,235,993 + -0.4 1,235,994 - -0.5 1,236,021 + -0.1 1,236,021 + -0.8 1,236,021 + +2.5 1,236,022 - +1.0 1,236,022 - +0.7 1,236,047 - +1.6 1,236,047 - +0.4 1,236,047 - -0.3 1,236,047 - -0.0 1,236,158 + -0.3 1,236,158 + -0.4 1,236,159 - -1.8 1,236,159 - +1.2 1,236,166 + -1.3 1,236,272 - PfGW456L13_1114 0.10 -1.8 1,236,427 + PfGW456L13_1114 0.25 -1.5 1,236,427 + PfGW456L13_1114 0.25 -0.9 1,236,428 - PfGW456L13_1114 0.25 -2.6 1,236,428 - PfGW456L13_1114 0.25 -3.6 1,236,752 - PfGW456L13_1114 0.56 -1.1 1,236,752 - PfGW456L13_1114 0.56 -2.7 1,236,970 + PfGW456L13_1114 0.77 -0.1 1,236,970 + PfGW456L13_1114 0.77 -2.2 1,236,970 + PfGW456L13_1114 0.77 -1.4 1,236,971 - PfGW456L13_1114 0.77 -0.6 1,236,971 - PfGW456L13_1114 0.77 -3.1 1,237,168 + -1.2 1,237,168 + -2.9 1,237,168 + -1.8 1,237,168 + -2.1 1,237,168 + -2.6 1,237,169 - -1.4 1,237,169 - -2.2 1,237,169 - -3.7 1,237,231 + +0.5 1,237,231 + -0.9 1,237,232 - +0.2 1,237,270 + -2.6 1,237,270 + -2.1 1,237,271 - +3.7 1,237,271 - +8.5 1,237,318 + -1.1 1,237,318 + -1.9 1,237,318 + -1.4 1,237,318 + -2.1 1,237,318 + -2.5 1,237,318 + -3.5 1,237,318 + -3.3 1,237,318 + -1.1 1,237,318 + -0.6 1,237,318 + -2.8 1,237,318 + -2.1 1,237,318 + -1.2 1,237,318 + -3.0 1,237,318 + -0.5 1,237,319 - +9.8 1,237,319 - +10.2 1,237,319 - +9.4 1,237,319 - +7.4 1,237,319 - +11.2 1,237,319 - +7.3 1,237,319 - +7.2 1,237,319 - +9.0 1,237,319 - +9.7 1,237,319 - +9.1 1,237,319 - +7.0 1,237,337 + -3.1 1,237,337 + -3.0 1,237,337 + -0.1 1,237,337 + -2.9 1,237,337 + -1.1 1,237,337 + -2.4 1,237,337 + -0.8 1,237,337 + -1.4 1,237,338 - +7.5 1,237,338 - +9.7 1,237,338 - +9.9 1,237,338 - +9.9 1,237,338 - +11.2 1,237,338 - +8.6 1,237,338 - +8.1 1,237,338 - +10.3 1,237,417 + PfGW456L13_1115 0.11 -0.8 1,237,417 + PfGW456L13_1115 0.11 +0.5 1,237,417 + PfGW456L13_1115 0.11 -0.5 1,237,418 - PfGW456L13_1115 0.11 +8.7 1,237,443 + PfGW456L13_1115 0.14 -2.1 1,237,443 + PfGW456L13_1115 0.14 +0.3 1,237,443 + PfGW456L13_1115 0.14 -1.4 1,237,444 - PfGW456L13_1115 0.14 +10.4 1,237,444 - PfGW456L13_1115 0.14 +9.2 1,237,444 - PfGW456L13_1115 0.14 +8.0 1,237,470 + PfGW456L13_1115 0.18 -0.8 1,237,470 + PfGW456L13_1115 0.18 -0.2 1,237,470 + PfGW456L13_1115 0.18 -0.4 1,237,470 + PfGW456L13_1115 0.18 +0.8 1,237,470 + PfGW456L13_1115 0.18 +1.1 1,237,470 + PfGW456L13_1115 0.18 -0.9 1,237,470 + PfGW456L13_1115 0.18 +0.5 1,237,470 + PfGW456L13_1115 0.18 +0.4 1,237,470 + PfGW456L13_1115 0.18 -1.5 1,237,470 + PfGW456L13_1115 0.18 -1.2 1,237,470 + PfGW456L13_1115 0.18 -0.2 1,237,470 + PfGW456L13_1115 0.18 -1.3 1,237,470 + PfGW456L13_1115 0.18 +0.8 1,237,470 + PfGW456L13_1115 0.18 -0.6 1,237,471 - PfGW456L13_1115 0.18 +11.4 1,237,471 - PfGW456L13_1115 0.18 +11.1 1,237,471 - PfGW456L13_1115 0.18 +11.2 1,237,471 - PfGW456L13_1115 0.18 +11.3 1,237,471 - PfGW456L13_1115 0.18 +10.7 1,237,471 - PfGW456L13_1115 0.18 +10.7 1,237,471 - PfGW456L13_1115 0.18 +11.2 1,237,471 - PfGW456L13_1115 0.18 +11.8 1,237,471 - PfGW456L13_1115 0.18 +8.7 1,237,471 - PfGW456L13_1115 0.18 +8.4 1,237,620 + PfGW456L13_1115 0.38 -0.3 1,237,620 + PfGW456L13_1115 0.38 +0.7 1,237,620 + PfGW456L13_1115 0.38 -0.5 1,237,620 + PfGW456L13_1115 0.38 -0.1 1,237,620 + PfGW456L13_1115 0.38 -0.6 1,237,620 + PfGW456L13_1115 0.38 -1.6 1,237,620 + PfGW456L13_1115 0.38 -0.3 1,237,620 + PfGW456L13_1115 0.38 -0.1 1,237,621 - PfGW456L13_1115 0.38 +3.8 1,237,621 - PfGW456L13_1115 0.38 +3.1 1,237,621 - PfGW456L13_1115 0.38 +3.4 1,237,621 - PfGW456L13_1115 0.38 +3.0 1,237,621 - PfGW456L13_1115 0.38 +3.9 1,237,621 - PfGW456L13_1115 0.38 +4.7 1,237,621 - PfGW456L13_1115 0.38 +5.3 1,237,621 - PfGW456L13_1115 0.38 +4.3 1,237,813 + PfGW456L13_1115 0.64 +0.0 1,237,830 + PfGW456L13_1115 0.66 +0.7 1,237,830 + PfGW456L13_1115 0.66 +0.7 1,237,855 + PfGW456L13_1115 0.70 -0.4 1,237,855 + PfGW456L13_1115 0.70 -0.2 1,237,856 - PfGW456L13_1115 0.70 +1.4 1,237,888 - PfGW456L13_1115 0.74 +0.8 1,237,888 - PfGW456L13_1115 0.74 +1.1 1,237,888 - PfGW456L13_1115 0.74 -0.8 1,237,888 - PfGW456L13_1115 0.74 +1.8 1,237,890 + PfGW456L13_1115 0.74 +1.0 1,237,890 + PfGW456L13_1115 0.74 +0.4 1,237,890 + PfGW456L13_1115 0.74 -1.3 1,237,890 + PfGW456L13_1115 0.74 +0.6 1,237,891 - PfGW456L13_1115 0.75 +1.5 1,237,891 - PfGW456L13_1115 0.75 +0.9 1,237,891 - PfGW456L13_1115 0.75 +2.7 1,238,019 + +0.3 1,238,028 + -0.3 1,238,029 - +1.0 1,238,139 - -0.1 1,238,139 - +0.9 1,238,158 - +1.8
Or see this region's nucleotide sequence