Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1154

Experiment: m.b. Choline Lysine 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1153 and B158DRAFT_1154 are separated by 55 nucleotidesB158DRAFT_1154 and B158DRAFT_1155 are separated by 25 nucleotides B158DRAFT_1153: B158DRAFT_1153 - histidyl-tRNA synthetase (EC 6.1.1.21), at 1,189,075 to 1,190,346 _1153 B158DRAFT_1154: B158DRAFT_1154 - Uncharacterized protein conserved in bacteria, at 1,190,402 to 1,191,031 _1154 B158DRAFT_1155: B158DRAFT_1155 - Beta-barrel assembly machine subunit BamB, at 1,191,057 to 1,192,223 _1155 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -2 -1 0 1at 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.362 kb on - strandat 1190.362 kb on - strandat 1190.520 kb on + strand, within B158DRAFT_1154at 1190.543 kb on - strand, within B158DRAFT_1154at 1190.566 kb on - strand, within B158DRAFT_1154at 1190.618 kb on - strand, within B158DRAFT_1154at 1190.689 kb on - strand, within B158DRAFT_1154at 1190.856 kb on + strand, within B158DRAFT_1154

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 12 mM
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1,190,354 + -0.1
1,190,354 + -0.9
1,190,354 + -0.0
1,190,354 + -0.0
1,190,354 + -0.6
1,190,354 + +0.8
1,190,354 + -0.3
1,190,354 + +0.4
1,190,362 - -1.3
1,190,362 - +0.6
1,190,520 + B158DRAFT_1154 0.19 -0.6
1,190,543 - B158DRAFT_1154 0.22 +0.4
1,190,566 - B158DRAFT_1154 0.26 -1.3
1,190,618 - B158DRAFT_1154 0.34 -0.9
1,190,689 - B158DRAFT_1154 0.46 -1.1
1,190,856 + B158DRAFT_1154 0.72 -2.2

Or see this region's nucleotide sequence