Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0607

Experiment: m.b. Choline Lysine 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0605 and B158DRAFT_0606 are separated by 82 nucleotidesB158DRAFT_0606 and B158DRAFT_0607 are separated by 56 nucleotidesB158DRAFT_0607 and B158DRAFT_0608 are separated by 190 nucleotides B158DRAFT_0605: B158DRAFT_0605 - Uncharacterized protein conserved in bacteria, at 609,700 to 610,347 _0605 B158DRAFT_0606: B158DRAFT_0606 - Uncharacterized conserved protein, at 610,430 to 611,146 _0606 B158DRAFT_0607: B158DRAFT_0607 - Beta-lactamase class C and other penicillin binding proteins, at 611,203 to 613,095 _0607 B158DRAFT_0608: B158DRAFT_0608 - chaperone protein DnaK, at 613,286 to 615,217 _0608 Position (kb) 611 612 613 614Strain fitness (log2 ratio) -2 -1 0 1at 610.223 kb on - strand, within B158DRAFT_0605at 610.299 kb on - strandat 610.349 kb on - strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.366 kb on + strandat 610.368 kb on + strandat 610.376 kb on + strandat 610.376 kb on - strandat 610.384 kb on - strandat 610.398 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.500 kb on - strandat 610.517 kb on + strand, within B158DRAFT_0606at 610.527 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.565 kb on + strand, within B158DRAFT_0606at 610.568 kb on - strand, within B158DRAFT_0606at 610.573 kb on - strand, within B158DRAFT_0606at 610.575 kb on + strand, within B158DRAFT_0606at 610.583 kb on - strand, within B158DRAFT_0606at 610.619 kb on + strand, within B158DRAFT_0606at 610.627 kb on - strand, within B158DRAFT_0606at 610.636 kb on - strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.648 kb on - strand, within B158DRAFT_0606at 610.663 kb on - strand, within B158DRAFT_0606at 610.663 kb on - strand, within B158DRAFT_0606at 610.694 kb on - strand, within B158DRAFT_0606at 610.748 kb on - strand, within B158DRAFT_0606at 610.796 kb on + strand, within B158DRAFT_0606at 610.804 kb on - strand, within B158DRAFT_0606at 610.901 kb on - strand, within B158DRAFT_0606at 610.901 kb on - strand, within B158DRAFT_0606at 611.114 kb on + strandat 611.122 kb on - strandat 611.161 kb on + strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.172 kb on + strandat 611.414 kb on + strand, within B158DRAFT_0607at 611.414 kb on + strand, within B158DRAFT_0607at 611.414 kb on + strand, within B158DRAFT_0607at 611.414 kb on + strand, within B158DRAFT_0607at 611.422 kb on - strand, within B158DRAFT_0607at 611.422 kb on - strand, within B158DRAFT_0607at 611.422 kb on - strand, within B158DRAFT_0607at 611.500 kb on - strand, within B158DRAFT_0607at 611.517 kb on - strand, within B158DRAFT_0607at 611.529 kb on - strand, within B158DRAFT_0607at 611.655 kb on + strand, within B158DRAFT_0607at 611.698 kb on - strand, within B158DRAFT_0607at 611.728 kb on + strand, within B158DRAFT_0607at 611.728 kb on + strand, within B158DRAFT_0607at 611.728 kb on + strand, within B158DRAFT_0607at 611.736 kb on - strand, within B158DRAFT_0607at 611.739 kb on + strand, within B158DRAFT_0607at 611.747 kb on - strand, within B158DRAFT_0607at 611.763 kb on + strand, within B158DRAFT_0607at 611.823 kb on - strand, within B158DRAFT_0607at 611.922 kb on + strand, within B158DRAFT_0607at 611.923 kb on + strand, within B158DRAFT_0607at 611.951 kb on - strand, within B158DRAFT_0607at 612.019 kb on - strand, within B158DRAFT_0607at 612.066 kb on + strand, within B158DRAFT_0607at 612.089 kb on + strand, within B158DRAFT_0607at 612.096 kb on - strand, within B158DRAFT_0607at 612.150 kb on - strand, within B158DRAFT_0607at 612.152 kb on + strand, within B158DRAFT_0607at 612.152 kb on + strand, within B158DRAFT_0607at 612.152 kb on + strand, within B158DRAFT_0607at 612.219 kb on - strand, within B158DRAFT_0607at 612.259 kb on + strand, within B158DRAFT_0607at 612.269 kb on + strand, within B158DRAFT_0607at 612.269 kb on + strand, within B158DRAFT_0607at 612.275 kb on + strand, within B158DRAFT_0607at 612.277 kb on - strand, within B158DRAFT_0607at 612.312 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.343 kb on + strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.351 kb on - strand, within B158DRAFT_0607at 612.383 kb on + strand, within B158DRAFT_0607at 612.384 kb on + strand, within B158DRAFT_0607at 612.384 kb on + strand, within B158DRAFT_0607at 612.391 kb on - strand, within B158DRAFT_0607at 612.411 kb on + strand, within B158DRAFT_0607at 612.416 kb on + strand, within B158DRAFT_0607at 612.587 kb on - strand, within B158DRAFT_0607at 612.587 kb on - strand, within B158DRAFT_0607at 612.594 kb on + strand, within B158DRAFT_0607at 612.596 kb on + strand, within B158DRAFT_0607at 612.669 kb on + strand, within B158DRAFT_0607at 612.687 kb on - strand, within B158DRAFT_0607at 612.710 kb on + strand, within B158DRAFT_0607at 612.734 kb on + strand, within B158DRAFT_0607at 612.734 kb on + strand, within B158DRAFT_0607at 612.742 kb on - strand, within B158DRAFT_0607at 612.742 kb on - strand, within B158DRAFT_0607at 612.771 kb on - strand, within B158DRAFT_0607at 612.827 kb on + strand, within B158DRAFT_0607at 612.841 kb on + strand, within B158DRAFT_0607at 613.080 kb on - strandat 613.080 kb on - strandat 613.126 kb on + strandat 613.126 kb on + strandat 613.134 kb on - strandat 613.134 kb on - strandat 613.134 kb on - strandat 613.186 kb on + strandat 613.186 kb on + strandat 613.493 kb on + strand, within B158DRAFT_0608at 613.991 kb on + strand, within B158DRAFT_0608

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 12 mM
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610,223 - B158DRAFT_0605 0.81 -0.2
610,299 - -0.0
610,349 - +0.4
610,356 + -0.2
610,356 + -0.4
610,356 + +0.2
610,366 + -0.1
610,368 + +0.1
610,376 + -0.0
610,376 - -0.3
610,384 - +0.5
610,398 + +0.2
610,442 + -0.4
610,442 + -0.0
610,442 + -0.5
610,500 - -0.8
610,517 + B158DRAFT_0606 0.12 -0.1
610,527 + B158DRAFT_0606 0.14 +0.4
610,537 + B158DRAFT_0606 0.15 -0.3
610,537 + B158DRAFT_0606 0.15 -0.1
610,545 - B158DRAFT_0606 0.16 +0.0
610,545 - B158DRAFT_0606 0.16 -0.3
610,565 + B158DRAFT_0606 0.19 -1.1
610,568 - B158DRAFT_0606 0.19 -0.1
610,573 - B158DRAFT_0606 0.20 -0.4
610,575 + B158DRAFT_0606 0.20 +0.3
610,583 - B158DRAFT_0606 0.21 +1.2
610,619 + B158DRAFT_0606 0.26 -0.3
610,627 - B158DRAFT_0606 0.27 -0.0
610,636 - B158DRAFT_0606 0.29 -0.2
610,640 + B158DRAFT_0606 0.29 -0.1
610,640 + B158DRAFT_0606 0.29 -0.2
610,648 - B158DRAFT_0606 0.30 -1.8
610,663 - B158DRAFT_0606 0.32 -0.1
610,663 - B158DRAFT_0606 0.32 -0.0
610,694 - B158DRAFT_0606 0.37 +0.1
610,748 - B158DRAFT_0606 0.44 -0.4
610,796 + B158DRAFT_0606 0.51 +0.4
610,804 - B158DRAFT_0606 0.52 -0.0
610,901 - B158DRAFT_0606 0.66 +0.1
610,901 - B158DRAFT_0606 0.66 -0.3
611,114 + -0.3
611,122 - +0.1
611,161 + -0.2
611,169 - -0.1
611,169 - -0.0
611,169 - -0.1
611,169 - +0.1
611,172 + -0.0
611,414 + B158DRAFT_0607 0.11 +0.1
611,414 + B158DRAFT_0607 0.11 +0.3
611,414 + B158DRAFT_0607 0.11 +0.1
611,414 + B158DRAFT_0607 0.11 -0.1
611,422 - B158DRAFT_0607 0.12 -0.0
611,422 - B158DRAFT_0607 0.12 -0.1
611,422 - B158DRAFT_0607 0.12 -0.1
611,500 - B158DRAFT_0607 0.16 +0.1
611,517 - B158DRAFT_0607 0.17 -0.4
611,529 - B158DRAFT_0607 0.17 -0.2
611,655 + B158DRAFT_0607 0.24 -0.3
611,698 - B158DRAFT_0607 0.26 +0.2
611,728 + B158DRAFT_0607 0.28 +0.2
611,728 + B158DRAFT_0607 0.28 -0.1
611,728 + B158DRAFT_0607 0.28 +0.2
611,736 - B158DRAFT_0607 0.28 +0.1
611,739 + B158DRAFT_0607 0.28 +0.4
611,747 - B158DRAFT_0607 0.29 -0.6
611,763 + B158DRAFT_0607 0.30 +0.2
611,823 - B158DRAFT_0607 0.33 +0.9
611,922 + B158DRAFT_0607 0.38 -0.2
611,923 + B158DRAFT_0607 0.38 +1.0
611,951 - B158DRAFT_0607 0.40 +0.0
612,019 - B158DRAFT_0607 0.43 +0.2
612,066 + B158DRAFT_0607 0.46 -0.0
612,089 + B158DRAFT_0607 0.47 -0.6
612,096 - B158DRAFT_0607 0.47 -0.2
612,150 - B158DRAFT_0607 0.50 +0.3
612,152 + B158DRAFT_0607 0.50 +0.7
612,152 + B158DRAFT_0607 0.50 -0.4
612,152 + B158DRAFT_0607 0.50 +0.2
612,219 - B158DRAFT_0607 0.54 +1.2
612,259 + B158DRAFT_0607 0.56 +0.3
612,269 + B158DRAFT_0607 0.56 -0.2
612,269 + B158DRAFT_0607 0.56 -1.5
612,275 + B158DRAFT_0607 0.57 +0.2
612,277 - B158DRAFT_0607 0.57 +0.1
612,312 + B158DRAFT_0607 0.59 +0.0
612,343 + B158DRAFT_0607 0.60 +0.4
612,343 + B158DRAFT_0607 0.60 -0.1
612,343 + B158DRAFT_0607 0.60 -0.5
612,343 + B158DRAFT_0607 0.60 +0.0
612,343 + B158DRAFT_0607 0.60 +0.0
612,343 + B158DRAFT_0607 0.60 +0.4
612,343 + B158DRAFT_0607 0.60 -0.1
612,343 + B158DRAFT_0607 0.60 +0.0
612,351 - B158DRAFT_0607 0.61 -0.2
612,351 - B158DRAFT_0607 0.61 +0.5
612,351 - B158DRAFT_0607 0.61 +0.2
612,351 - B158DRAFT_0607 0.61 +0.5
612,351 - B158DRAFT_0607 0.61 -0.3
612,351 - B158DRAFT_0607 0.61 +0.2
612,383 + B158DRAFT_0607 0.62 +0.1
612,384 + B158DRAFT_0607 0.62 +0.4
612,384 + B158DRAFT_0607 0.62 +0.1
612,391 - B158DRAFT_0607 0.63 +0.3
612,411 + B158DRAFT_0607 0.64 -0.6
612,416 + B158DRAFT_0607 0.64 +0.2
612,587 - B158DRAFT_0607 0.73 +0.1
612,587 - B158DRAFT_0607 0.73 +0.3
612,594 + B158DRAFT_0607 0.73 -0.3
612,596 + B158DRAFT_0607 0.74 -0.1
612,669 + B158DRAFT_0607 0.77 -0.2
612,687 - B158DRAFT_0607 0.78 +0.1
612,710 + B158DRAFT_0607 0.80 +0.6
612,734 + B158DRAFT_0607 0.81 +0.2
612,734 + B158DRAFT_0607 0.81 -0.1
612,742 - B158DRAFT_0607 0.81 +0.2
612,742 - B158DRAFT_0607 0.81 +0.0
612,771 - B158DRAFT_0607 0.83 +0.1
612,827 + B158DRAFT_0607 0.86 -0.3
612,841 + B158DRAFT_0607 0.87 -0.1
613,080 - +0.2
613,080 - +0.5
613,126 + +0.1
613,126 + -0.3
613,134 - -1.4
613,134 - +0.1
613,134 - -0.1
613,186 + -0.3
613,186 + -0.5
613,493 + B158DRAFT_0608 0.11 -0.1
613,991 + B158DRAFT_0608 0.36 +0.2

Or see this region's nucleotide sequence