Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6170 and Atu6171 are separated by 16 nucleotides Atu6171 and Atu6172 are separated by 100 nucleotides Atu6172 and Atu6173 are separated by 35 nucleotides Atu6173 and Atu6174 overlap by 14 nucleotides Atu6174 and Atu6175 overlap by 4 nucleotides
Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674
Atu6170
Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353
Atu6171
Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341
Atu6172
Atu6173: Atu6173 - component of type IV secretion system, at 189,377 to 189,544
Atu6173
Atu6174: Atu6174 - component of type IV secretion system, at 189,531 to 190,244
Atu6174
Atu6175: Atu6175 - component of type IV secretion system, at 190,241 to 191,122
Atu6175
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 187.473 kb on - strand at 187.473 kb on - strand at 187.482 kb on - strand at 187.496 kb on - strand at 187.520 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.577 kb on - strand at 187.577 kb on - strand at 187.594 kb on - strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.614 kb on - strand at 187.614 kb on - strand at 187.617 kb on + strand at 187.622 kb on + strand at 187.681 kb on - strand at 187.705 kb on + strand at 187.731 kb on + strand at 187.731 kb on + strand at 187.818 kb on - strand, within Atu6171 at 187.839 kb on + strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.864 kb on - strand, within Atu6171 at 187.892 kb on + strand, within Atu6171 at 188.026 kb on - strand, within Atu6171 at 188.036 kb on + strand, within Atu6171 at 188.044 kb on - strand, within Atu6171 at 188.095 kb on - strand, within Atu6171 at 188.103 kb on - strand, within Atu6171 at 188.136 kb on + strand, within Atu6171 at 188.229 kb on + strand, within Atu6171 at 188.269 kb on + strand, within Atu6171 at 188.277 kb on - strand, within Atu6171 at 188.305 kb on + strand at 188.334 kb on + strand at 188.348 kb on + strand at 188.356 kb on - strand at 188.356 kb on - strand at 188.374 kb on + strand at 188.379 kb on + strand at 188.444 kb on + strand at 188.452 kb on - strand at 188.452 kb on - strand at 188.485 kb on - strand at 188.528 kb on - strand at 188.542 kb on - strand at 188.548 kb on + strand, within Atu6172 at 188.584 kb on + strand, within Atu6172 at 188.586 kb on - strand, within Atu6172 at 188.594 kb on - strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.607 kb on + strand, within Atu6172 at 188.662 kb on - strand, within Atu6172 at 188.699 kb on - strand, within Atu6172 at 188.781 kb on + strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.799 kb on - strand, within Atu6172 at 188.801 kb on + strand, within Atu6172 at 188.809 kb on - strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.826 kb on - strand, within Atu6172 at 188.898 kb on + strand, within Atu6172 at 188.921 kb on + strand, within Atu6172 at 188.981 kb on + strand, within Atu6172 at 188.988 kb on + strand, within Atu6172 at 189.003 kb on + strand, within Atu6172 at 189.043 kb on + strand, within Atu6172 at 189.061 kb on + strand, within Atu6172 at 189.062 kb on - strand, within Atu6172 at 189.069 kb on - strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.141 kb on - strand, within Atu6172 at 189.311 kb on - strand at 189.311 kb on - strand at 189.343 kb on - strand at 189.375 kb on + strand at 189.375 kb on + strand at 189.394 kb on + strand, within Atu6173 at 189.486 kb on + strand, within Atu6173 at 189.503 kb on + strand, within Atu6173 at 189.511 kb on - strand, within Atu6173 at 189.519 kb on - strand, within Atu6173 at 189.521 kb on - strand, within Atu6173 at 189.537 kb on - strand at 189.538 kb on + strand at 189.546 kb on - strand at 189.548 kb on + strand at 189.551 kb on - strand at 189.576 kb on + strand at 189.579 kb on - strand at 189.584 kb on + strand at 189.584 kb on + strand at 189.592 kb on - strand at 189.593 kb on + strand at 189.602 kb on + strand at 189.638 kb on + strand, within Atu6174 at 189.645 kb on - strand, within Atu6174 at 189.646 kb on - strand, within Atu6174 at 189.652 kb on - strand, within Atu6174 at 189.655 kb on - strand, within Atu6174 at 189.665 kb on - strand, within Atu6174 at 189.687 kb on + strand, within Atu6174 at 189.710 kb on - strand, within Atu6174 at 189.722 kb on + strand, within Atu6174 at 189.722 kb on + strand, within Atu6174 at 189.725 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.805 kb on - strand, within Atu6174 at 189.810 kb on - strand, within Atu6174 at 189.813 kb on - strand, within Atu6174 at 189.846 kb on + strand, within Atu6174 at 189.852 kb on - strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.890 kb on - strand, within Atu6174 at 189.892 kb on - strand, within Atu6174 at 189.897 kb on - strand, within Atu6174 at 189.897 kb on - strand, within Atu6174 at 189.916 kb on + strand, within Atu6174 at 189.924 kb on - strand, within Atu6174 at 189.924 kb on - strand, within Atu6174 at 190.000 kb on + strand, within Atu6174 at 190.003 kb on - strand, within Atu6174 at 190.030 kb on + strand, within Atu6174 at 190.038 kb on - strand, within Atu6174 at 190.111 kb on - strand, within Atu6174 at 190.119 kb on - strand, within Atu6174 at 190.153 kb on + strand, within Atu6174 at 190.161 kb on - strand, within Atu6174 at 190.171 kb on - strand, within Atu6174 at 190.189 kb on + strand at 190.201 kb on + strand at 190.222 kb on + strand at 190.279 kb on - strand at 190.307 kb on - strand at 190.321 kb on + strand at 190.326 kb on + strand at 190.326 kb on + strand at 190.329 kb on - strand at 190.334 kb on - strand, within Atu6175
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 187,473 - +2.0 187,473 - +1.6 187,482 - +2.8 187,496 - +0.5 187,520 + +2.8 187,569 + -0.6 187,569 + -0.5 187,569 + +0.3 187,577 - +1.1 187,577 - +0.9 187,594 - +0.3 187,606 + +2.2 187,606 + +1.0 187,606 + +1.3 187,606 + +1.0 187,614 - +0.6 187,614 - +0.2 187,617 + -0.1 187,622 + +0.0 187,681 - +2.2 187,705 + -1.6 187,731 + +4.8 187,731 + +1.2 187,818 - Atu6171 0.19 +1.9 187,839 + Atu6171 0.22 +0.5 187,847 - Atu6171 0.24 +0.8 187,847 - Atu6171 0.24 +1.3 187,864 - Atu6171 0.26 +0.7 187,892 + Atu6171 0.30 +0.7 188,026 - Atu6171 0.51 +0.9 188,036 + Atu6171 0.52 +1.2 188,044 - Atu6171 0.53 +1.4 188,095 - Atu6171 0.61 +0.4 188,103 - Atu6171 0.62 +3.2 188,136 + Atu6171 0.67 -0.9 188,229 + Atu6171 0.81 -0.2 188,269 + Atu6171 0.87 +0.3 188,277 - Atu6171 0.88 +2.0 188,305 + -1.0 188,334 + +1.1 188,348 + +0.8 188,356 - +0.6 188,356 - +0.3 188,374 + -0.5 188,379 + +1.2 188,444 + +1.2 188,452 - +1.6 188,452 - +1.7 188,485 - +0.9 188,528 - -1.0 188,542 - +0.0 188,548 + Atu6172 0.11 +0.6 188,584 + Atu6172 0.15 +0.5 188,586 - Atu6172 0.15 +2.8 188,594 - Atu6172 0.16 +1.1 188,598 + Atu6172 0.16 +1.3 188,598 + Atu6172 0.16 +0.4 188,607 + Atu6172 0.17 +0.8 188,662 - Atu6172 0.23 -0.4 188,699 - Atu6172 0.28 +0.7 188,781 + Atu6172 0.37 +0.7 188,789 - Atu6172 0.38 -0.2 188,789 - Atu6172 0.38 +0.4 188,789 - Atu6172 0.38 -0.1 188,799 - Atu6172 0.39 +2.0 188,801 + Atu6172 0.39 +1.2 188,809 - Atu6172 0.40 +0.8 188,818 + Atu6172 0.41 -0.8 188,818 + Atu6172 0.41 -0.1 188,818 + Atu6172 0.41 +0.1 188,826 - Atu6172 0.42 +0.4 188,898 + Atu6172 0.50 -0.7 188,921 + Atu6172 0.53 +0.4 188,981 + Atu6172 0.59 +0.1 188,988 + Atu6172 0.60 +2.5 189,003 + Atu6172 0.62 +1.5 189,043 + Atu6172 0.66 -0.9 189,061 + Atu6172 0.68 +0.5 189,062 - Atu6172 0.68 -1.4 189,069 - Atu6172 0.69 -1.9 189,133 + Atu6172 0.76 -0.6 189,133 + Atu6172 0.76 +0.7 189,133 + Atu6172 0.76 +2.5 189,133 + Atu6172 0.76 +2.2 189,133 + Atu6172 0.76 -0.4 189,133 + Atu6172 0.76 +0.2 189,141 - Atu6172 0.77 +0.9 189,311 - +0.2 189,311 - -0.0 189,343 - +2.2 189,375 + +1.5 189,375 + -0.0 189,394 + Atu6173 0.10 +0.9 189,486 + Atu6173 0.65 -0.6 189,503 + Atu6173 0.75 +0.4 189,511 - Atu6173 0.80 +0.7 189,519 - Atu6173 0.85 -0.3 189,521 - Atu6173 0.86 -0.5 189,537 - +1.5 189,538 + +1.8 189,546 - +1.5 189,548 + +0.1 189,551 - -0.8 189,576 + +1.7 189,579 - -0.2 189,584 + +0.4 189,584 + -0.7 189,592 - -0.2 189,593 + +2.0 189,602 + -0.7 189,638 + Atu6174 0.15 +0.8 189,645 - Atu6174 0.16 +1.7 189,646 - Atu6174 0.16 +2.2 189,652 - Atu6174 0.17 +0.5 189,655 - Atu6174 0.17 -1.0 189,665 - Atu6174 0.19 -0.3 189,687 + Atu6174 0.22 +1.7 189,710 - Atu6174 0.25 +1.5 189,722 + Atu6174 0.27 -0.7 189,722 + Atu6174 0.27 +0.0 189,725 - Atu6174 0.27 +1.4 189,730 - Atu6174 0.28 +0.7 189,730 - Atu6174 0.28 +2.5 189,730 - Atu6174 0.28 +0.3 189,730 - Atu6174 0.28 +1.2 189,735 - Atu6174 0.29 -0.5 189,735 - Atu6174 0.29 +0.4 189,735 - Atu6174 0.29 +0.3 189,805 - Atu6174 0.38 +2.5 189,810 - Atu6174 0.39 +2.8 189,813 - Atu6174 0.39 -0.7 189,846 + Atu6174 0.44 -0.6 189,852 - Atu6174 0.45 +0.1 189,889 + Atu6174 0.50 +0.1 189,889 + Atu6174 0.50 +2.8 189,889 + Atu6174 0.50 +1.3 189,890 - Atu6174 0.50 +0.5 189,892 - Atu6174 0.51 +2.0 189,897 - Atu6174 0.51 +0.9 189,897 - Atu6174 0.51 +0.8 189,916 + Atu6174 0.54 +0.4 189,924 - Atu6174 0.55 +0.6 189,924 - Atu6174 0.55 +2.2 190,000 + Atu6174 0.66 -0.7 190,003 - Atu6174 0.66 +0.3 190,030 + Atu6174 0.70 +2.7 190,038 - Atu6174 0.71 +0.8 190,111 - Atu6174 0.81 +1.2 190,119 - Atu6174 0.82 +1.0 190,153 + Atu6174 0.87 +0.4 190,161 - Atu6174 0.88 +0.5 190,171 - Atu6174 0.90 +1.0 190,189 + +0.1 190,201 + +0.7 190,222 + -0.7 190,279 - +0.5 190,307 - -0.4 190,321 + +1.9 190,326 + +0.2 190,326 + +0.0 190,329 - +0.9 190,334 - Atu6175 0.11 +2.8
Or see this region's nucleotide sequence