Strain Fitness in Agrobacterium fabrum C58 around Atu5005

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5004 and Atu5005 are separated by 19 nucleotidesAtu5005 and Atu5006 are separated by 60 nucleotides Atu5004: Atu5004 - deoxyfructose oxidoreductase, at 5,325 to 6,332 Atu5004 Atu5005: Atu5005 - deoxyfructosyl-amino acid ABC-type membrane transporter, at 6,352 to 7,860 Atu5005 Atu5006: Atu5006 - deoxyfructosyl-amino acid transporter periplasmic binding protein, at 7,921 to 8,754 Atu5006 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1 2 3at 5.377 kb on + strandat 5.421 kb on - strandat 5.432 kb on + strand, within Atu5004at 5.573 kb on - strand, within Atu5004at 5.598 kb on - strand, within Atu5004at 5.646 kb on + strand, within Atu5004at 5.654 kb on - strand, within Atu5004at 5.726 kb on + strand, within Atu5004at 5.730 kb on - strand, within Atu5004at 5.776 kb on + strand, within Atu5004at 5.850 kb on - strand, within Atu5004at 5.884 kb on + strand, within Atu5004at 5.894 kb on + strand, within Atu5004at 5.962 kb on - strand, within Atu5004at 6.055 kb on + strand, within Atu5004at 6.055 kb on + strand, within Atu5004at 6.073 kb on + strand, within Atu5004at 6.073 kb on - strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.171 kb on - strand, within Atu5004at 6.172 kb on - strand, within Atu5004at 6.252 kb on + strandat 6.355 kb on + strandat 6.363 kb on - strandat 6.447 kb on - strandat 6.554 kb on + strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.581 kb on + strand, within Atu5005at 6.589 kb on - strand, within Atu5005at 6.608 kb on - strand, within Atu5005at 6.620 kb on - strand, within Atu5005at 6.745 kb on - strand, within Atu5005at 6.755 kb on + strand, within Atu5005at 7.013 kb on + strand, within Atu5005at 7.013 kb on - strand, within Atu5005at 7.021 kb on - strand, within Atu5005at 7.041 kb on - strand, within Atu5005at 7.146 kb on - strand, within Atu5005at 7.196 kb on + strand, within Atu5005at 7.209 kb on - strand, within Atu5005at 7.217 kb on - strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.320 kb on - strand, within Atu5005at 7.357 kb on + strand, within Atu5005at 7.393 kb on + strand, within Atu5005at 7.401 kb on - strand, within Atu5005at 7.401 kb on - strand, within Atu5005at 7.431 kb on + strand, within Atu5005at 7.468 kb on - strand, within Atu5005at 7.564 kb on - strand, within Atu5005at 7.599 kb on + strand, within Atu5005at 7.617 kb on + strand, within Atu5005at 7.655 kb on + strand, within Atu5005at 7.655 kb on + strand, within Atu5005at 7.663 kb on - strand, within Atu5005at 7.663 kb on - strand, within Atu5005at 7.680 kb on + strand, within Atu5005at 7.688 kb on - strand, within Atu5005at 7.721 kb on - strandat 7.803 kb on - strandat 7.842 kb on + strandat 7.855 kb on + strandat 7.871 kb on - strandat 7.871 kb on - strandat 7.916 kb on + strandat 8.018 kb on + strand, within Atu5006at 8.026 kb on - strand, within Atu5006at 8.026 kb on - strand, within Atu5006at 8.030 kb on + strand, within Atu5006at 8.031 kb on - strand, within Atu5006at 8.038 kb on - strand, within Atu5006at 8.050 kb on - strand, within Atu5006at 8.137 kb on - strand, within Atu5006at 8.185 kb on - strand, within Atu5006at 8.272 kb on + strand, within Atu5006at 8.307 kb on - strand, within Atu5006at 8.347 kb on + strand, within Atu5006at 8.376 kb on + strand, within Atu5006at 8.579 kb on + strand, within Atu5006at 8.580 kb on - strand, within Atu5006at 8.599 kb on - strand, within Atu5006at 8.630 kb on + strand, within Atu5006at 8.682 kb on + strandat 8.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,377 + +0.5
5,421 - -0.1
5,432 + Atu5004 0.11 +0.9
5,573 - Atu5004 0.25 +0.0
5,598 - Atu5004 0.27 +1.3
5,646 + Atu5004 0.32 -0.7
5,654 - Atu5004 0.33 -0.1
5,726 + Atu5004 0.40 +0.6
5,730 - Atu5004 0.40 +3.3
5,776 + Atu5004 0.45 +0.1
5,850 - Atu5004 0.52 -0.6
5,884 + Atu5004 0.55 +0.0
5,894 + Atu5004 0.56 +0.5
5,962 - Atu5004 0.63 +0.7
6,055 + Atu5004 0.72 -0.7
6,055 + Atu5004 0.72 -1.0
6,073 + Atu5004 0.74 +0.7
6,073 - Atu5004 0.74 +0.9
6,112 + Atu5004 0.78 +2.3
6,112 + Atu5004 0.78 -0.1
6,112 + Atu5004 0.78 +0.7
6,171 - Atu5004 0.84 +0.5
6,172 - Atu5004 0.84 +0.9
6,252 + +0.9
6,355 + -0.8
6,363 - +0.6
6,447 - +1.3
6,554 + Atu5005 0.13 -0.1
6,562 - Atu5005 0.14 -0.1
6,562 - Atu5005 0.14 -0.1
6,562 - Atu5005 0.14 +0.3
6,581 + Atu5005 0.15 -0.1
6,589 - Atu5005 0.16 +0.1
6,608 - Atu5005 0.17 +0.5
6,620 - Atu5005 0.18 -1.6
6,745 - Atu5005 0.26 +0.4
6,755 + Atu5005 0.27 +0.8
7,013 + Atu5005 0.44 -0.7
7,013 - Atu5005 0.44 -0.0
7,021 - Atu5005 0.44 -0.2
7,041 - Atu5005 0.46 -0.1
7,146 - Atu5005 0.53 +1.7
7,196 + Atu5005 0.56 -0.4
7,209 - Atu5005 0.57 +0.1
7,217 - Atu5005 0.57 +0.6
7,279 + Atu5005 0.61 -0.8
7,279 + Atu5005 0.61 -0.0
7,279 + Atu5005 0.61 +0.1
7,287 - Atu5005 0.62 +0.3
7,287 - Atu5005 0.62 +2.0
7,287 - Atu5005 0.62 -0.7
7,287 - Atu5005 0.62 -0.4
7,320 - Atu5005 0.64 +2.1
7,357 + Atu5005 0.67 +0.5
7,393 + Atu5005 0.69 -0.6
7,401 - Atu5005 0.70 -0.0
7,401 - Atu5005 0.70 +0.2
7,431 + Atu5005 0.72 +1.5
7,468 - Atu5005 0.74 -0.6
7,564 - Atu5005 0.80 -0.0
7,599 + Atu5005 0.83 -1.3
7,617 + Atu5005 0.84 -0.1
7,655 + Atu5005 0.86 -0.1
7,655 + Atu5005 0.86 +1.5
7,663 - Atu5005 0.87 +0.7
7,663 - Atu5005 0.87 -1.0
7,680 + Atu5005 0.88 +0.9
7,688 - Atu5005 0.89 -0.3
7,721 - -0.7
7,803 - +3.3
7,842 + +1.0
7,855 + +0.6
7,871 - -0.7
7,871 - -0.3
7,916 + -0.1
8,018 + Atu5006 0.12 +0.6
8,026 - Atu5006 0.13 -0.7
8,026 - Atu5006 0.13 +1.1
8,030 + Atu5006 0.13 +0.3
8,031 - Atu5006 0.13 +0.3
8,038 - Atu5006 0.14 +1.7
8,050 - Atu5006 0.15 +1.0
8,137 - Atu5006 0.26 +0.6
8,185 - Atu5006 0.32 +0.1
8,272 + Atu5006 0.42 +0.6
8,307 - Atu5006 0.46 -0.4
8,347 + Atu5006 0.51 +2.7
8,376 + Atu5006 0.55 +1.9
8,579 + Atu5006 0.79 -0.6
8,580 - Atu5006 0.79 +0.6
8,599 - Atu5006 0.81 +0.0
8,630 + Atu5006 0.85 +0.3
8,682 + +0.1
8,771 + +1.0

Or see this region's nucleotide sequence