Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_814

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_812 and PfGW456L13_813 overlap by 29 nucleotidesPfGW456L13_813 and PfGW456L13_814 are separated by 99 nucleotidesPfGW456L13_814 and PfGW456L13_815 are separated by 127 nucleotidesPfGW456L13_815 and PfGW456L13_816 are separated by 182 nucleotides PfGW456L13_812 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 910,358 to 911,668 _812 PfGW456L13_813 - Translation initiation inhibitor, at 911,640 to 911,993 _813 PfGW456L13_814 - Alanine racemase (EC 5.1.1.1), at 912,093 to 913,166 _814 PfGW456L13_815 - Putrescine utilization regulator, at 913,294 to 913,842 _815 PfGW456L13_816 - Cytochrome c5, at 914,025 to 914,447 _816 Position (kb) 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 911.129 kb on + strand, within PfGW456L13_812at 911.175 kb on - strand, within PfGW456L13_812at 911.256 kb on - strand, within PfGW456L13_812at 911.599 kb on + strandat 911.599 kb on + strandat 911.599 kb on + strandat 911.600 kb on - strandat 911.706 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.991 kb on + strandat 911.991 kb on + strandat 911.991 kb on + strandat 913.152 kb on + strandat 913.152 kb on + strandat 913.152 kb on + strandat 913.153 kb on - strandat 913.225 kb on + strandat 913.225 kb on + strandat 913.226 kb on - strandat 913.226 kb on - strandat 913.229 kb on + strandat 913.230 kb on - strandat 913.261 kb on - strandat 913.327 kb on - strandat 913.519 kb on + strand, within PfGW456L13_815at 913.519 kb on + strand, within PfGW456L13_815at 913.519 kb on + strand, within PfGW456L13_815at 913.520 kb on - strand, within PfGW456L13_815at 913.520 kb on - strand, within PfGW456L13_815at 913.520 kb on - strand, within PfGW456L13_815at 913.520 kb on - strand, within PfGW456L13_815at 913.542 kb on + strand, within PfGW456L13_815at 913.542 kb on + strand, within PfGW456L13_815at 913.543 kb on - strand, within PfGW456L13_815at 913.621 kb on + strand, within PfGW456L13_815at 913.621 kb on + strand, within PfGW456L13_815at 913.621 kb on + strand, within PfGW456L13_815at 913.746 kb on + strand, within PfGW456L13_815at 913.746 kb on + strand, within PfGW456L13_815at 913.747 kb on - strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.750 kb on + strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.751 kb on - strand, within PfGW456L13_815at 913.753 kb on + strand, within PfGW456L13_815at 913.753 kb on + strand, within PfGW456L13_815at 913.753 kb on + strand, within PfGW456L13_815at 913.753 kb on + strand, within PfGW456L13_815at 913.753 kb on + strand, within PfGW456L13_815at 913.754 kb on - strand, within PfGW456L13_815at 913.754 kb on - strand, within PfGW456L13_815at 913.754 kb on - strand, within PfGW456L13_815at 913.754 kb on - strand, within PfGW456L13_815at 913.764 kb on + strand, within PfGW456L13_815at 913.764 kb on + strand, within PfGW456L13_815at 913.765 kb on - strand, within PfGW456L13_815at 913.811 kb on + strandat 913.812 kb on - strandat 913.841 kb on - strandat 913.901 kb on + strandat 913.901 kb on + strandat 913.901 kb on + strandat 913.901 kb on + strandat 913.901 kb on + strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.902 kb on - strandat 913.949 kb on + strandat 913.949 kb on + strandat 913.950 kb on - strandat 913.950 kb on - strandat 913.950 kb on - strandat 913.950 kb on - strandat 913.951 kb on + strandat 913.951 kb on + strandat 913.951 kb on + strandat 913.951 kb on + strandat 913.951 kb on + strandat 913.951 kb on + strandat 913.952 kb on - strandat 913.952 kb on - strandat 913.990 kb on + strandat 913.991 kb on - strandat 913.991 kb on - strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.020 kb on + strandat 914.021 kb on - strandat 914.021 kb on - strandat 914.021 kb on - strandat 914.021 kb on - strandat 914.021 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
911,129 + PfGW456L13_812 0.59 +1.1
911,175 - PfGW456L13_812 0.62 +2.6
911,256 - PfGW456L13_812 0.68 +0.8
911,599 + +0.6
911,599 + +0.8
911,599 + +0.0
911,600 - +1.9
911,706 + PfGW456L13_813 0.19 -1.1
911,838 + PfGW456L13_813 0.56 +0.7
911,838 + PfGW456L13_813 0.56 -0.9
911,991 + -0.3
911,991 + +0.5
911,991 + +0.0
913,152 + +0.8
913,152 + +1.1
913,152 + +0.6
913,153 - +0.1
913,225 + -0.4
913,225 + +0.3
913,226 - -0.3
913,226 - -1.0
913,229 + -0.8
913,230 - -0.5
913,261 - -0.5
913,327 - -0.7
913,519 + PfGW456L13_815 0.41 -0.6
913,519 + PfGW456L13_815 0.41 -1.9
913,519 + PfGW456L13_815 0.41 +0.3
913,520 - PfGW456L13_815 0.41 -1.0
913,520 - PfGW456L13_815 0.41 -0.2
913,520 - PfGW456L13_815 0.41 -0.9
913,520 - PfGW456L13_815 0.41 -0.8
913,542 + PfGW456L13_815 0.45 -1.6
913,542 + PfGW456L13_815 0.45 -0.1
913,543 - PfGW456L13_815 0.45 -0.9
913,621 + PfGW456L13_815 0.60 +0.6
913,621 + PfGW456L13_815 0.60 +0.0
913,621 + PfGW456L13_815 0.60 +0.4
913,746 + PfGW456L13_815 0.82 +1.1
913,746 + PfGW456L13_815 0.82 -0.6
913,747 - PfGW456L13_815 0.83 -0.2
913,750 + PfGW456L13_815 0.83 -0.7
913,750 + PfGW456L13_815 0.83 +0.1
913,750 + PfGW456L13_815 0.83 -0.6
913,750 + PfGW456L13_815 0.83 -0.7
913,750 + PfGW456L13_815 0.83 +0.7
913,750 + PfGW456L13_815 0.83 -0.7
913,750 + PfGW456L13_815 0.83 -0.5
913,750 + PfGW456L13_815 0.83 +0.8
913,750 + PfGW456L13_815 0.83 -0.5
913,750 + PfGW456L13_815 0.83 -0.7
913,750 + PfGW456L13_815 0.83 -0.3
913,750 + PfGW456L13_815 0.83 -0.4
913,750 + PfGW456L13_815 0.83 -0.1
913,750 + PfGW456L13_815 0.83 -0.4
913,750 + PfGW456L13_815 0.83 -0.2
913,751 - PfGW456L13_815 0.83 -2.5
913,751 - PfGW456L13_815 0.83 -1.2
913,751 - PfGW456L13_815 0.83 +1.1
913,751 - PfGW456L13_815 0.83 -0.4
913,751 - PfGW456L13_815 0.83 +2.1
913,751 - PfGW456L13_815 0.83 +0.3
913,751 - PfGW456L13_815 0.83 -2.7
913,751 - PfGW456L13_815 0.83 -0.1
913,751 - PfGW456L13_815 0.83 -0.4
913,753 + PfGW456L13_815 0.84 -0.4
913,753 + PfGW456L13_815 0.84 -1.6
913,753 + PfGW456L13_815 0.84 -0.2
913,753 + PfGW456L13_815 0.84 +0.3
913,753 + PfGW456L13_815 0.84 -1.9
913,754 - PfGW456L13_815 0.84 -0.1
913,754 - PfGW456L13_815 0.84 -0.9
913,754 - PfGW456L13_815 0.84 -0.3
913,754 - PfGW456L13_815 0.84 +0.6
913,764 + PfGW456L13_815 0.86 -0.5
913,764 + PfGW456L13_815 0.86 +0.0
913,765 - PfGW456L13_815 0.86 -1.9
913,811 + +0.8
913,812 - +1.0
913,841 - -0.7
913,901 + -0.3
913,901 + -0.4
913,901 + +0.1
913,901 + +0.7
913,901 + -0.2
913,902 - -0.4
913,902 - +0.6
913,902 - +0.4
913,902 - -0.2
913,902 - +0.4
913,902 - -1.3
913,902 - +0.2
913,902 - -0.6
913,902 - -0.6
913,949 + -0.4
913,949 + -0.1
913,950 - +0.2
913,950 - +0.8
913,950 - +0.6
913,950 - +0.0
913,951 + +0.1
913,951 + +0.5
913,951 + +0.6
913,951 + -0.6
913,951 + +1.1
913,951 + +0.6
913,952 - -0.3
913,952 - -0.4
913,990 + -0.3
913,991 - -0.5
913,991 - -1.0
914,020 + -0.8
914,020 + -1.4
914,020 + -1.2
914,020 + +1.8
914,020 + -1.0
914,020 + -0.7
914,020 + -0.8
914,020 + -1.2
914,020 + +0.3
914,020 + +0.5
914,020 + -0.7
914,020 + +1.4
914,021 - -0.2
914,021 - -0.2
914,021 - -1.0
914,021 - +0.4
914,021 - +1.2

Or see this region's nucleotide sequence