Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_692

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_691 and PfGW456L13_692 are separated by 32 nucleotidesPfGW456L13_692 and PfGW456L13_693 are separated by 63 nucleotides PfGW456L13_691 - Transcriptional regulator, at 784,893 to 785,795 _691 PfGW456L13_692 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 785,828 to 786,541 _692 PfGW456L13_693 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 786,605 to 788,635 _693 Position (kb) 785 786 787Strain fitness (log2 ratio) -1 0 1 2at 784.842 kb on - strandat 784.867 kb on + strandat 784.867 kb on + strandat 784.867 kb on + strandat 784.867 kb on + strandat 784.867 kb on + strandat 784.868 kb on - strandat 784.868 kb on - strandat 784.868 kb on - strandat 784.872 kb on - strandat 784.872 kb on - strandat 785.024 kb on - strand, within PfGW456L13_691at 785.024 kb on - strand, within PfGW456L13_691at 785.061 kb on + strand, within PfGW456L13_691at 785.062 kb on - strand, within PfGW456L13_691at 785.085 kb on + strand, within PfGW456L13_691at 785.086 kb on - strand, within PfGW456L13_691at 785.086 kb on - strand, within PfGW456L13_691at 785.086 kb on - strand, within PfGW456L13_691at 785.232 kb on + strand, within PfGW456L13_691at 785.233 kb on - strand, within PfGW456L13_691at 785.233 kb on - strand, within PfGW456L13_691at 785.233 kb on - strand, within PfGW456L13_691at 785.233 kb on - strand, within PfGW456L13_691at 785.476 kb on + strand, within PfGW456L13_691at 785.593 kb on + strand, within PfGW456L13_691at 785.594 kb on - strand, within PfGW456L13_691at 785.616 kb on + strand, within PfGW456L13_691at 785.617 kb on - strand, within PfGW456L13_691at 785.617 kb on - strand, within PfGW456L13_691at 785.617 kb on - strand, within PfGW456L13_691at 785.617 kb on - strand, within PfGW456L13_691at 785.703 kb on + strand, within PfGW456L13_691at 785.704 kb on - strand, within PfGW456L13_691at 785.717 kb on + strandat 785.717 kb on + strandat 785.717 kb on + strandat 785.717 kb on + strandat 785.717 kb on + strandat 785.718 kb on - strandat 785.718 kb on - strandat 785.798 kb on + strandat 785.798 kb on + strandat 785.799 kb on - strandat 785.815 kb on + strandat 785.815 kb on + strandat 785.815 kb on + strandat 785.816 kb on - strandat 785.816 kb on - strandat 785.860 kb on - strandat 785.860 kb on - strandat 785.860 kb on - strandat 785.866 kb on + strandat 785.866 kb on + strandat 785.866 kb on + strandat 785.866 kb on + strandat 785.866 kb on + strandat 785.867 kb on - strandat 785.867 kb on - strandat 785.933 kb on + strand, within PfGW456L13_692at 785.933 kb on + strand, within PfGW456L13_692at 785.933 kb on + strand, within PfGW456L13_692at 786.134 kb on + strand, within PfGW456L13_692at 786.134 kb on + strand, within PfGW456L13_692at 786.135 kb on - strand, within PfGW456L13_692at 786.135 kb on - strand, within PfGW456L13_692at 786.262 kb on + strand, within PfGW456L13_692at 786.262 kb on + strand, within PfGW456L13_692at 786.262 kb on + strand, within PfGW456L13_692at 786.263 kb on - strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.281 kb on + strand, within PfGW456L13_692at 786.282 kb on - strand, within PfGW456L13_692at 786.282 kb on - strand, within PfGW456L13_692at 786.282 kb on - strand, within PfGW456L13_692at 786.305 kb on + strand, within PfGW456L13_692at 786.305 kb on + strand, within PfGW456L13_692at 786.305 kb on + strand, within PfGW456L13_692at 786.306 kb on - strand, within PfGW456L13_692at 786.306 kb on - strand, within PfGW456L13_692at 786.327 kb on + strand, within PfGW456L13_692at 786.328 kb on - strand, within PfGW456L13_692at 786.328 kb on - strand, within PfGW456L13_692at 786.328 kb on - strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.404 kb on + strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.405 kb on - strand, within PfGW456L13_692at 786.446 kb on + strand, within PfGW456L13_692at 786.446 kb on + strand, within PfGW456L13_692at 786.447 kb on - strand, within PfGW456L13_692at 786.447 kb on - strand, within PfGW456L13_692at 786.447 kb on - strand, within PfGW456L13_692at 786.731 kb on + strandat 786.731 kb on + strandat 786.731 kb on + strandat 786.731 kb on + strandat 786.732 kb on - strandat 786.732 kb on - strandat 786.732 kb on - strandat 786.755 kb on + strandat 786.756 kb on - strandat 786.756 kb on - strandat 787.025 kb on + strand, within PfGW456L13_693at 787.025 kb on + strand, within PfGW456L13_693at 787.025 kb on + strand, within PfGW456L13_693at 787.025 kb on + strand, within PfGW456L13_693at 787.025 kb on + strand, within PfGW456L13_693at 787.026 kb on - strand, within PfGW456L13_693at 787.026 kb on - strand, within PfGW456L13_693at 787.026 kb on - strand, within PfGW456L13_693at 787.026 kb on - strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.157 kb on + strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.158 kb on - strand, within PfGW456L13_693at 787.222 kb on - strand, within PfGW456L13_693at 787.336 kb on + strand, within PfGW456L13_693at 787.449 kb on + strand, within PfGW456L13_693at 787.449 kb on + strand, within PfGW456L13_693at 787.449 kb on + strand, within PfGW456L13_693at 787.450 kb on - strand, within PfGW456L13_693at 787.450 kb on - strand, within PfGW456L13_693

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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784,842 - -0.2
784,867 + +0.4
784,867 + +1.0
784,867 + +0.8
784,867 + +0.4
784,867 + +0.8
784,868 - +0.3
784,868 - -0.2
784,868 - +0.3
784,872 - -0.8
784,872 - +0.1
785,024 - PfGW456L13_691 0.15 +0.1
785,024 - PfGW456L13_691 0.15 -1.0
785,061 + PfGW456L13_691 0.19 +0.7
785,062 - PfGW456L13_691 0.19 +2.1
785,085 + PfGW456L13_691 0.21 +0.7
785,086 - PfGW456L13_691 0.21 -0.9
785,086 - PfGW456L13_691 0.21 +0.2
785,086 - PfGW456L13_691 0.21 -0.2
785,232 + PfGW456L13_691 0.38 +0.9
785,233 - PfGW456L13_691 0.38 -0.6
785,233 - PfGW456L13_691 0.38 +1.2
785,233 - PfGW456L13_691 0.38 +0.3
785,233 - PfGW456L13_691 0.38 +0.5
785,476 + PfGW456L13_691 0.65 -0.2
785,593 + PfGW456L13_691 0.78 +0.3
785,594 - PfGW456L13_691 0.78 +0.1
785,616 + PfGW456L13_691 0.80 +0.4
785,617 - PfGW456L13_691 0.80 -0.4
785,617 - PfGW456L13_691 0.80 -0.3
785,617 - PfGW456L13_691 0.80 -0.4
785,617 - PfGW456L13_691 0.80 +1.3
785,703 + PfGW456L13_691 0.90 -0.8
785,704 - PfGW456L13_691 0.90 -0.2
785,717 + +1.3
785,717 + +1.3
785,717 + +0.1
785,717 + +0.4
785,717 + +0.3
785,718 - +1.2
785,718 - -1.2
785,798 + -1.4
785,798 + +0.8
785,799 - -0.3
785,815 + +0.1
785,815 + +0.3
785,815 + +0.4
785,816 - +0.3
785,816 - -0.9
785,860 - +0.2
785,860 - +1.4
785,860 - +0.6
785,866 + +0.2
785,866 + +0.9
785,866 + +0.6
785,866 + -0.1
785,866 + -1.2
785,867 - +0.3
785,867 - +0.5
785,933 + PfGW456L13_692 0.15 +0.1
785,933 + PfGW456L13_692 0.15 -0.1
785,933 + PfGW456L13_692 0.15 +1.4
786,134 + PfGW456L13_692 0.43 +1.2
786,134 + PfGW456L13_692 0.43 +0.2
786,135 - PfGW456L13_692 0.43 -0.9
786,135 - PfGW456L13_692 0.43 +1.0
786,262 + PfGW456L13_692 0.61 -0.0
786,262 + PfGW456L13_692 0.61 +0.8
786,262 + PfGW456L13_692 0.61 +1.3
786,263 - PfGW456L13_692 0.61 +1.0
786,281 + PfGW456L13_692 0.63 +0.3
786,281 + PfGW456L13_692 0.63 +0.1
786,281 + PfGW456L13_692 0.63 -0.0
786,281 + PfGW456L13_692 0.63 -0.7
786,281 + PfGW456L13_692 0.63 -0.8
786,281 + PfGW456L13_692 0.63 +0.1
786,281 + PfGW456L13_692 0.63 -1.7
786,282 - PfGW456L13_692 0.64 +0.4
786,282 - PfGW456L13_692 0.64 +0.0
786,282 - PfGW456L13_692 0.64 -0.2
786,305 + PfGW456L13_692 0.67 +0.1
786,305 + PfGW456L13_692 0.67 +1.1
786,305 + PfGW456L13_692 0.67 +0.9
786,306 - PfGW456L13_692 0.67 +1.1
786,306 - PfGW456L13_692 0.67 -0.2
786,327 + PfGW456L13_692 0.70 +0.1
786,328 - PfGW456L13_692 0.70 -0.2
786,328 - PfGW456L13_692 0.70 +0.1
786,328 - PfGW456L13_692 0.70 +0.2
786,404 + PfGW456L13_692 0.81 +0.3
786,404 + PfGW456L13_692 0.81 -0.1
786,404 + PfGW456L13_692 0.81 +2.3
786,404 + PfGW456L13_692 0.81 -0.3
786,404 + PfGW456L13_692 0.81 -0.1
786,404 + PfGW456L13_692 0.81 -0.3
786,404 + PfGW456L13_692 0.81 +0.7
786,405 - PfGW456L13_692 0.81 -0.0
786,405 - PfGW456L13_692 0.81 +0.9
786,405 - PfGW456L13_692 0.81 +0.1
786,405 - PfGW456L13_692 0.81 +0.1
786,405 - PfGW456L13_692 0.81 -0.0
786,405 - PfGW456L13_692 0.81 -0.1
786,405 - PfGW456L13_692 0.81 +0.4
786,405 - PfGW456L13_692 0.81 -1.4
786,405 - PfGW456L13_692 0.81 -0.8
786,405 - PfGW456L13_692 0.81 +0.8
786,405 - PfGW456L13_692 0.81 +0.1
786,405 - PfGW456L13_692 0.81 -0.2
786,446 + PfGW456L13_692 0.87 -0.3
786,446 + PfGW456L13_692 0.87 +0.2
786,447 - PfGW456L13_692 0.87 +0.1
786,447 - PfGW456L13_692 0.87 -0.2
786,447 - PfGW456L13_692 0.87 +0.1
786,731 + -0.3
786,731 + -0.2
786,731 + +0.3
786,731 + +0.0
786,732 - -0.8
786,732 - -0.7
786,732 - -0.0
786,755 + -0.3
786,756 - +0.1
786,756 - +1.0
787,025 + PfGW456L13_693 0.21 +0.3
787,025 + PfGW456L13_693 0.21 -0.7
787,025 + PfGW456L13_693 0.21 +0.3
787,025 + PfGW456L13_693 0.21 +0.1
787,025 + PfGW456L13_693 0.21 -0.2
787,026 - PfGW456L13_693 0.21 +0.0
787,026 - PfGW456L13_693 0.21 +0.7
787,026 - PfGW456L13_693 0.21 +0.5
787,026 - PfGW456L13_693 0.21 +1.1
787,157 + PfGW456L13_693 0.27 -0.4
787,157 + PfGW456L13_693 0.27 +0.5
787,157 + PfGW456L13_693 0.27 -0.1
787,157 + PfGW456L13_693 0.27 +0.8
787,157 + PfGW456L13_693 0.27 -1.7
787,157 + PfGW456L13_693 0.27 -0.2
787,157 + PfGW456L13_693 0.27 +1.3
787,158 - PfGW456L13_693 0.27 -0.6
787,158 - PfGW456L13_693 0.27 +0.2
787,158 - PfGW456L13_693 0.27 +0.7
787,158 - PfGW456L13_693 0.27 +0.9
787,158 - PfGW456L13_693 0.27 +0.4
787,158 - PfGW456L13_693 0.27 +0.8
787,222 - PfGW456L13_693 0.30 -0.2
787,336 + PfGW456L13_693 0.36 +1.1
787,449 + PfGW456L13_693 0.42 -0.0
787,449 + PfGW456L13_693 0.42 +0.0
787,449 + PfGW456L13_693 0.42 -1.0
787,450 - PfGW456L13_693 0.42 -0.9
787,450 - PfGW456L13_693 0.42 +0.2

Or see this region's nucleotide sequence