Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_64

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_63 and PfGW456L13_64 are separated by 618 nucleotidesPfGW456L13_64 and PfGW456L13_65 overlap by 1 nucleotidesPfGW456L13_65 and PfGW456L13_66 overlap by 4 nucleotides PfGW456L13_63 - hypothetical protein, at 73,748 to 74,167 _63 PfGW456L13_64 - Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase, at 74,786 to 76,492 _64 PfGW456L13_65 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 76,492 to 77,226 _65 PfGW456L13_66 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 77,223 to 77,849 _66 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 73.804 kb on - strand, within PfGW456L13_63at 74.083 kb on + strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.156 kb on - strandat 74.174 kb on - strandat 74.183 kb on + strandat 74.188 kb on + strandat 74.308 kb on - strandat 74.370 kb on - strandat 74.390 kb on + strandat 74.405 kb on + strandat 74.406 kb on - strandat 74.429 kb on - strandat 74.463 kb on - strandat 74.578 kb on + strandat 74.578 kb on + strandat 74.580 kb on + strandat 74.581 kb on - strandat 74.654 kb on + strandat 74.661 kb on + strandat 74.661 kb on + strandat 74.695 kb on - strandat 74.743 kb on + strandat 74.744 kb on - strandat 74.744 kb on - strandat 74.767 kb on - strandat 74.777 kb on + strandat 74.788 kb on - strandat 74.789 kb on + strandat 74.789 kb on + strandat 74.790 kb on - strandat 74.811 kb on + strandat 74.812 kb on - strandat 74.826 kb on + strandat 74.836 kb on + strandat 74.836 kb on + strandat 74.837 kb on - strandat 74.885 kb on + strandat 74.886 kb on - strandat 74.886 kb on - strandat 74.886 kb on - strandat 75.032 kb on + strand, within PfGW456L13_64at 75.033 kb on - strand, within PfGW456L13_64at 75.033 kb on - strand, within PfGW456L13_64at 75.066 kb on + strand, within PfGW456L13_64at 75.066 kb on + strand, within PfGW456L13_64at 75.067 kb on - strand, within PfGW456L13_64at 75.067 kb on - strand, within PfGW456L13_64at 75.067 kb on - strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.450 kb on + strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.451 kb on - strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.647 kb on + strand, within PfGW456L13_64at 75.876 kb on + strand, within PfGW456L13_64at 75.876 kb on + strand, within PfGW456L13_64at 75.877 kb on - strand, within PfGW456L13_64at 75.877 kb on - strand, within PfGW456L13_64at 76.062 kb on + strand, within PfGW456L13_64at 76.062 kb on + strand, within PfGW456L13_64at 76.063 kb on - strand, within PfGW456L13_64at 76.169 kb on + strand, within PfGW456L13_64at 76.170 kb on - strand, within PfGW456L13_64at 76.170 kb on - strand, within PfGW456L13_64at 76.326 kb on + strandat 76.359 kb on + strandat 76.360 kb on - strandat 76.416 kb on + strandat 76.416 kb on + strandat 76.417 kb on - strandat 76.429 kb on + strandat 76.430 kb on - strandat 76.430 kb on - strandat 76.432 kb on + strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.607 kb on + strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.769 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.967 kb on + strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.991 kb on + strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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73,804 - PfGW456L13_63 0.13 -0.3
74,083 + PfGW456L13_63 0.80 +0.5
74,084 - PfGW456L13_63 0.80 +0.3
74,084 - PfGW456L13_63 0.80 +0.3
74,084 - PfGW456L13_63 0.80 +0.3
74,156 - +0.3
74,174 - -1.1
74,183 + +0.8
74,188 + -2.6
74,308 - +1.3
74,370 - +0.9
74,390 + +1.5
74,405 + +0.5
74,406 - +0.0
74,429 - +0.3
74,463 - -0.1
74,578 + +1.9
74,578 + +0.5
74,580 + -1.4
74,581 - +0.6
74,654 + -0.1
74,661 + +0.2
74,661 + +0.4
74,695 - +0.1
74,743 + +0.5
74,744 - -1.3
74,744 - +1.0
74,767 - +0.7
74,777 + -0.1
74,788 - -1.1
74,789 + -1.0
74,789 + +1.0
74,790 - +0.3
74,811 + -0.6
74,812 - -0.6
74,826 + -0.4
74,836 + -0.7
74,836 + +0.5
74,837 - -1.6
74,885 + -1.1
74,886 - -0.4
74,886 - -1.0
74,886 - -0.5
75,032 + PfGW456L13_64 0.14 -1.0
75,033 - PfGW456L13_64 0.14 -0.8
75,033 - PfGW456L13_64 0.14 +0.3
75,066 + PfGW456L13_64 0.16 +1.1
75,066 + PfGW456L13_64 0.16 -1.4
75,067 - PfGW456L13_64 0.16 +0.2
75,067 - PfGW456L13_64 0.16 -0.5
75,067 - PfGW456L13_64 0.16 -0.9
75,450 + PfGW456L13_64 0.39 -0.5
75,450 + PfGW456L13_64 0.39 +0.1
75,450 + PfGW456L13_64 0.39 +0.1
75,450 + PfGW456L13_64 0.39 +0.3
75,450 + PfGW456L13_64 0.39 +0.5
75,450 + PfGW456L13_64 0.39 +0.0
75,451 - PfGW456L13_64 0.39 -2.5
75,451 - PfGW456L13_64 0.39 +0.5
75,451 - PfGW456L13_64 0.39 -1.2
75,451 - PfGW456L13_64 0.39 +0.5
75,451 - PfGW456L13_64 0.39 -0.5
75,451 - PfGW456L13_64 0.39 -0.1
75,451 - PfGW456L13_64 0.39 +0.3
75,451 - PfGW456L13_64 0.39 +0.1
75,613 + PfGW456L13_64 0.48 +0.0
75,613 + PfGW456L13_64 0.48 +0.6
75,613 + PfGW456L13_64 0.48 +0.2
75,613 + PfGW456L13_64 0.48 -0.6
75,613 + PfGW456L13_64 0.48 -0.2
75,613 + PfGW456L13_64 0.48 -0.7
75,613 + PfGW456L13_64 0.48 -2.1
75,613 + PfGW456L13_64 0.48 -0.1
75,614 - PfGW456L13_64 0.49 -0.2
75,614 - PfGW456L13_64 0.49 +0.1
75,614 - PfGW456L13_64 0.49 -1.5
75,614 - PfGW456L13_64 0.49 +0.2
75,614 - PfGW456L13_64 0.49 -0.2
75,614 - PfGW456L13_64 0.49 +0.1
75,647 + PfGW456L13_64 0.50 -0.1
75,876 + PfGW456L13_64 0.64 -0.1
75,876 + PfGW456L13_64 0.64 +0.5
75,877 - PfGW456L13_64 0.64 -0.7
75,877 - PfGW456L13_64 0.64 -0.2
76,062 + PfGW456L13_64 0.75 -0.1
76,062 + PfGW456L13_64 0.75 -0.0
76,063 - PfGW456L13_64 0.75 +0.8
76,169 + PfGW456L13_64 0.81 -1.2
76,170 - PfGW456L13_64 0.81 -0.5
76,170 - PfGW456L13_64 0.81 +0.8
76,326 + +0.3
76,359 + -0.9
76,360 - -0.9
76,416 + -0.7
76,416 + -0.9
76,417 - -0.4
76,429 + +1.1
76,430 - +0.2
76,430 - -0.9
76,432 + -0.4
76,433 - -1.0
76,433 - -0.5
76,433 - +0.9
76,433 - +0.3
76,535 + +1.4
76,535 + +0.8
76,607 + PfGW456L13_65 0.16 +0.7
76,608 - PfGW456L13_65 0.16 -0.6
76,608 - PfGW456L13_65 0.16 -0.5
76,608 - PfGW456L13_65 0.16 +0.3
76,608 - PfGW456L13_65 0.16 -0.3
76,608 - PfGW456L13_65 0.16 +2.5
76,769 + PfGW456L13_65 0.38 -0.7
76,868 + PfGW456L13_65 0.51 -1.6
76,868 + PfGW456L13_65 0.51 +0.3
76,868 + PfGW456L13_65 0.51 -1.2
76,868 + PfGW456L13_65 0.51 -0.2
76,868 + PfGW456L13_65 0.51 -1.1
76,869 - PfGW456L13_65 0.51 -0.3
76,869 - PfGW456L13_65 0.51 -0.6
76,869 - PfGW456L13_65 0.51 -1.1
76,869 - PfGW456L13_65 0.51 +0.6
76,869 - PfGW456L13_65 0.51 -2.8
76,869 - PfGW456L13_65 0.51 -1.2
76,869 - PfGW456L13_65 0.51 -1.0
76,869 - PfGW456L13_65 0.51 +0.2
76,874 + PfGW456L13_65 0.52 -1.1
76,874 + PfGW456L13_65 0.52 -0.2
76,874 + PfGW456L13_65 0.52 -0.7
76,874 + PfGW456L13_65 0.52 -0.1
76,874 + PfGW456L13_65 0.52 -0.3
76,874 + PfGW456L13_65 0.52 -0.3
76,874 + PfGW456L13_65 0.52 -0.7
76,874 + PfGW456L13_65 0.52 -0.5
76,874 + PfGW456L13_65 0.52 +0.4
76,874 + PfGW456L13_65 0.52 -1.2
76,875 - PfGW456L13_65 0.52 -0.7
76,875 - PfGW456L13_65 0.52 -1.7
76,875 - PfGW456L13_65 0.52 -1.1
76,875 - PfGW456L13_65 0.52 +0.2
76,875 - PfGW456L13_65 0.52 +0.5
76,875 - PfGW456L13_65 0.52 +0.9
76,875 - PfGW456L13_65 0.52 +0.1
76,875 - PfGW456L13_65 0.52 +0.8
76,875 - PfGW456L13_65 0.52 -0.0
76,875 - PfGW456L13_65 0.52 -0.7
76,875 - PfGW456L13_65 0.52 -0.8
76,883 + PfGW456L13_65 0.53 -1.1
76,883 + PfGW456L13_65 0.53 -0.9
76,884 - PfGW456L13_65 0.53 -0.8
76,884 - PfGW456L13_65 0.53 -0.3
76,884 - PfGW456L13_65 0.53 -0.3
76,884 - PfGW456L13_65 0.53 -0.1
76,967 + PfGW456L13_65 0.65 -1.1
76,968 - PfGW456L13_65 0.65 +0.5
76,968 - PfGW456L13_65 0.65 +0.4
76,991 + PfGW456L13_65 0.68 -0.4
76,992 - PfGW456L13_65 0.68 +0.5
76,992 - PfGW456L13_65 0.68 -1.4
76,992 - PfGW456L13_65 0.68 -1.4
77,117 + PfGW456L13_65 0.85 +0.1
77,117 + PfGW456L13_65 0.85 -0.4
77,117 + PfGW456L13_65 0.85 -1.3
77,117 + PfGW456L13_65 0.85 +0.3
77,118 - PfGW456L13_65 0.85 +0.2
77,118 - PfGW456L13_65 0.85 -0.1
77,425 + PfGW456L13_66 0.32 -2.2
77,425 + PfGW456L13_66 0.32 +0.1
77,425 + PfGW456L13_66 0.32 -0.4

Or see this region's nucleotide sequence