Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4960

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4959 and PfGW456L13_4960 are separated by 57 nucleotidesPfGW456L13_4960 and PfGW456L13_4961 are separated by 12 nucleotides PfGW456L13_4959 - Protein sirB1, at 5,537,423 to 5,538,226 _4959 PfGW456L13_4960 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 5,538,284 to 5,538,919 _4960 PfGW456L13_4961 - Fumarylacetoacetase (EC 3.7.1.2), at 5,538,932 to 5,540,236 _4961 Position (kb) 5538 5539Strain fitness (log2 ratio) -2 -1 0 1 2at 5537.314 kb on + strandat 5537.314 kb on + strandat 5537.315 kb on - strandat 5537.315 kb on - strandat 5537.345 kb on + strandat 5537.346 kb on - strandat 5537.364 kb on + strandat 5537.364 kb on + strandat 5537.364 kb on + strandat 5537.365 kb on - strandat 5537.365 kb on - strandat 5537.365 kb on - strandat 5537.365 kb on - strandat 5537.365 kb on - strandat 5537.697 kb on + strand, within PfGW456L13_4959at 5537.697 kb on + strand, within PfGW456L13_4959at 5537.698 kb on - strand, within PfGW456L13_4959at 5537.698 kb on - strand, within PfGW456L13_4959at 5537.698 kb on - strand, within PfGW456L13_4959at 5537.898 kb on - strand, within PfGW456L13_4959at 5537.990 kb on + strand, within PfGW456L13_4959at 5537.990 kb on + strand, within PfGW456L13_4959at 5537.990 kb on + strand, within PfGW456L13_4959at 5537.990 kb on + strand, within PfGW456L13_4959at 5537.991 kb on - strand, within PfGW456L13_4959at 5537.991 kb on - strand, within PfGW456L13_4959at 5537.991 kb on - strand, within PfGW456L13_4959at 5537.991 kb on - strand, within PfGW456L13_4959at 5538.071 kb on + strand, within PfGW456L13_4959at 5538.072 kb on - strand, within PfGW456L13_4959at 5538.093 kb on - strand, within PfGW456L13_4959at 5538.372 kb on + strand, within PfGW456L13_4960at 5538.426 kb on + strand, within PfGW456L13_4960at 5538.426 kb on + strand, within PfGW456L13_4960at 5538.427 kb on - strand, within PfGW456L13_4960at 5538.427 kb on - strand, within PfGW456L13_4960at 5538.843 kb on + strand, within PfGW456L13_4960at 5538.900 kb on + strandat 5538.900 kb on + strandat 5538.903 kb on + strandat 5538.903 kb on + strandat 5538.903 kb on + strandat 5538.903 kb on + strandat 5538.903 kb on + strandat 5538.903 kb on + strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.904 kb on - strandat 5538.907 kb on + strandat 5538.907 kb on + strandat 5538.907 kb on + strandat 5538.907 kb on + strandat 5538.907 kb on + strandat 5538.907 kb on + strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.908 kb on - strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.909 kb on + strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5538.910 kb on - strandat 5539.042 kb on + strandat 5539.042 kb on + strandat 5539.042 kb on + strandat 5539.218 kb on + strand, within PfGW456L13_4961at 5539.218 kb on + strand, within PfGW456L13_4961at 5539.218 kb on + strand, within PfGW456L13_4961at 5539.218 kb on + strand, within PfGW456L13_4961at 5539.295 kb on + strand, within PfGW456L13_4961at 5539.295 kb on + strand, within PfGW456L13_4961at 5539.295 kb on + strand, within PfGW456L13_4961at 5539.296 kb on - strand, within PfGW456L13_4961at 5539.296 kb on - strand, within PfGW456L13_4961at 5539.296 kb on - strand, within PfGW456L13_4961at 5539.485 kb on + strand, within PfGW456L13_4961at 5539.755 kb on + strand, within PfGW456L13_4961at 5539.755 kb on + strand, within PfGW456L13_4961at 5539.756 kb on - strand, within PfGW456L13_4961at 5539.756 kb on - strand, within PfGW456L13_4961at 5539.756 kb on - strand, within PfGW456L13_4961at 5539.756 kb on - strand, within PfGW456L13_4961at 5539.756 kb on - strand, within PfGW456L13_4961at 5539.761 kb on + strand, within PfGW456L13_4961at 5539.830 kb on + strand, within PfGW456L13_4961at 5539.830 kb on + strand, within PfGW456L13_4961at 5539.831 kb on - strand, within PfGW456L13_4961at 5539.831 kb on - strand, within PfGW456L13_4961at 5539.843 kb on - strand, within PfGW456L13_4961at 5539.843 kb on - strand, within PfGW456L13_4961at 5539.843 kb on - strand, within PfGW456L13_4961at 5539.843 kb on - strand, within PfGW456L13_4961at 5539.843 kb on - strand, within PfGW456L13_4961

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,537,314 + +0.5
5,537,314 + +1.1
5,537,315 - +0.9
5,537,315 - -1.8
5,537,345 + -0.3
5,537,346 - -1.0
5,537,364 + +0.2
5,537,364 + -0.0
5,537,364 + +1.3
5,537,365 - -0.5
5,537,365 - +0.1
5,537,365 - +0.5
5,537,365 - +0.5
5,537,365 - -1.1
5,537,697 + PfGW456L13_4959 0.34 +0.1
5,537,697 + PfGW456L13_4959 0.34 +0.3
5,537,698 - PfGW456L13_4959 0.34 +0.5
5,537,698 - PfGW456L13_4959 0.34 -0.6
5,537,698 - PfGW456L13_4959 0.34 -1.2
5,537,898 - PfGW456L13_4959 0.59 -0.6
5,537,990 + PfGW456L13_4959 0.71 -0.9
5,537,990 + PfGW456L13_4959 0.71 -0.1
5,537,990 + PfGW456L13_4959 0.71 +0.4
5,537,990 + PfGW456L13_4959 0.71 +0.3
5,537,991 - PfGW456L13_4959 0.71 +0.4
5,537,991 - PfGW456L13_4959 0.71 -0.0
5,537,991 - PfGW456L13_4959 0.71 -1.3
5,537,991 - PfGW456L13_4959 0.71 -0.7
5,538,071 + PfGW456L13_4959 0.81 +0.0
5,538,072 - PfGW456L13_4959 0.81 -0.4
5,538,093 - PfGW456L13_4959 0.83 -0.7
5,538,372 + PfGW456L13_4960 0.14 -0.8
5,538,426 + PfGW456L13_4960 0.22 -0.3
5,538,426 + PfGW456L13_4960 0.22 +1.5
5,538,427 - PfGW456L13_4960 0.22 +0.0
5,538,427 - PfGW456L13_4960 0.22 -0.2
5,538,843 + PfGW456L13_4960 0.88 +0.6
5,538,900 + -0.3
5,538,900 + +0.4
5,538,903 + -1.1
5,538,903 + -0.1
5,538,903 + +0.6
5,538,903 + +0.4
5,538,903 + +0.6
5,538,903 + +0.8
5,538,904 - +1.3
5,538,904 - -0.4
5,538,904 - -0.6
5,538,904 - -0.2
5,538,904 - +0.1
5,538,904 - -0.6
5,538,904 - +1.1
5,538,904 - -0.1
5,538,904 - +1.0
5,538,904 - -0.9
5,538,907 + +1.9
5,538,907 + +0.6
5,538,907 + -0.1
5,538,907 + +1.1
5,538,907 + +0.4
5,538,907 + +1.0
5,538,908 - -2.0
5,538,908 - +1.2
5,538,908 - +0.4
5,538,908 - +0.2
5,538,908 - +1.5
5,538,908 - +0.4
5,538,908 - +0.2
5,538,909 + +0.3
5,538,909 + -1.6
5,538,909 + +0.5
5,538,909 + -0.2
5,538,909 + +0.5
5,538,909 + -0.2
5,538,909 + +0.8
5,538,910 - +2.0
5,538,910 - +0.3
5,538,910 - -1.2
5,538,910 - -1.6
5,538,910 - +0.8
5,538,910 - +0.6
5,538,910 - -0.5
5,538,910 - +0.4
5,538,910 - +0.1
5,538,910 - -0.6
5,538,910 - -0.7
5,539,042 + +0.3
5,539,042 + +0.2
5,539,042 + -0.3
5,539,218 + PfGW456L13_4961 0.22 +0.1
5,539,218 + PfGW456L13_4961 0.22 +0.8
5,539,218 + PfGW456L13_4961 0.22 +0.8
5,539,218 + PfGW456L13_4961 0.22 -0.6
5,539,295 + PfGW456L13_4961 0.28 +0.2
5,539,295 + PfGW456L13_4961 0.28 -0.1
5,539,295 + PfGW456L13_4961 0.28 +0.1
5,539,296 - PfGW456L13_4961 0.28 +0.2
5,539,296 - PfGW456L13_4961 0.28 +0.9
5,539,296 - PfGW456L13_4961 0.28 +1.3
5,539,485 + PfGW456L13_4961 0.42 -0.1
5,539,755 + PfGW456L13_4961 0.63 +1.2
5,539,755 + PfGW456L13_4961 0.63 -0.3
5,539,756 - PfGW456L13_4961 0.63 +0.6
5,539,756 - PfGW456L13_4961 0.63 -1.3
5,539,756 - PfGW456L13_4961 0.63 -0.4
5,539,756 - PfGW456L13_4961 0.63 +1.1
5,539,756 - PfGW456L13_4961 0.63 +0.4
5,539,761 + PfGW456L13_4961 0.64 -0.7
5,539,830 + PfGW456L13_4961 0.69 +0.3
5,539,830 + PfGW456L13_4961 0.69 +0.8
5,539,831 - PfGW456L13_4961 0.69 +0.3
5,539,831 - PfGW456L13_4961 0.69 -0.2
5,539,843 - PfGW456L13_4961 0.70 -0.4
5,539,843 - PfGW456L13_4961 0.70 -0.2
5,539,843 - PfGW456L13_4961 0.70 -0.1
5,539,843 - PfGW456L13_4961 0.70 +0.8
5,539,843 - PfGW456L13_4961 0.70 -0.8

Or see this region's nucleotide sequence