Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4035

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4033 and PfGW456L13_4034 are separated by 229 nucleotidesPfGW456L13_4034 and PfGW456L13_4035 are separated by 10 nucleotidesPfGW456L13_4035 and PfGW456L13_4036 are separated by 92 nucleotidesPfGW456L13_4036 and PfGW456L13_4037 are separated by 94 nucleotides PfGW456L13_4033 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 4,526,061 to 4,526,768 _4033 PfGW456L13_4034 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 4,526,998 to 4,527,606 _4034 PfGW456L13_4035 - Cell division inhibitor-related protein, at 4,527,617 to 4,528,093 _4035 PfGW456L13_4036 - FIG00954079: hypothetical protein, at 4,528,186 to 4,528,419 _4036 PfGW456L13_4037 - FIG00953287: hypothetical protein, at 4,528,514 to 4,529,038 _4037 Position (kb) 4527 4528 4529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4526.804 kb on - strandat 4526.866 kb on + strandat 4526.866 kb on + strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.957 kb on - strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.960 kb on + strandat 4526.960 kb on + strandat 4526.997 kb on + strandat 4526.997 kb on + strandat 4527.002 kb on + strandat 4527.708 kb on + strand, within PfGW456L13_4035at 4527.898 kb on + strand, within PfGW456L13_4035at 4527.982 kb on + strand, within PfGW456L13_4035at 4528.156 kb on - strandat 4528.336 kb on - strand, within PfGW456L13_4036at 4528.336 kb on - strand, within PfGW456L13_4036at 4528.387 kb on + strand, within PfGW456L13_4036at 4528.402 kb on + strandat 4528.419 kb on + strandat 4528.420 kb on - strandat 4528.420 kb on - strandat 4528.420 kb on - strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.450 kb on + strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.451 kb on - strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.452 kb on + strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.453 kb on - strandat 4528.454 kb on + strandat 4528.454 kb on + strandat 4528.454 kb on + strandat 4528.454 kb on + strandat 4528.454 kb on + strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.455 kb on - strandat 4528.848 kb on + strand, within PfGW456L13_4037at 4528.848 kb on + strand, within PfGW456L13_4037at 4528.848 kb on + strand, within PfGW456L13_4037at 4528.849 kb on - strand, within PfGW456L13_4037at 4529.022 kb on + strandat 4529.022 kb on + strandat 4529.022 kb on + strandat 4529.023 kb on - strandat 4529.023 kb on - strandat 4529.023 kb on - strandat 4529.061 kb on + strandat 4529.061 kb on + strandat 4529.061 kb on + strandat 4529.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,526,804 - -0.1
4,526,866 + +0.0
4,526,866 + -1.1
4,526,867 - +0.7
4,526,867 - -0.7
4,526,867 - -0.0
4,526,867 - -0.2
4,526,867 - +0.9
4,526,957 - +0.4
4,526,958 + +2.4
4,526,958 + +1.0
4,526,958 + -0.4
4,526,958 + +0.2
4,526,960 + +0.6
4,526,960 + -0.0
4,526,997 + -0.2
4,526,997 + +0.6
4,527,002 + +0.0
4,527,708 + PfGW456L13_4035 0.19 -2.5
4,527,898 + PfGW456L13_4035 0.59 -0.6
4,527,982 + PfGW456L13_4035 0.77 -0.5
4,528,156 - -1.6
4,528,336 - PfGW456L13_4036 0.64 -0.2
4,528,336 - PfGW456L13_4036 0.64 +0.2
4,528,387 + PfGW456L13_4036 0.86 +0.9
4,528,402 + +0.4
4,528,419 + -0.1
4,528,420 - -0.7
4,528,420 - +0.4
4,528,420 - +0.2
4,528,450 + -1.0
4,528,450 + +0.7
4,528,450 + +0.5
4,528,450 + -1.4
4,528,450 + +0.6
4,528,450 + -0.5
4,528,450 + +0.7
4,528,450 + +0.4
4,528,451 - +0.0
4,528,451 - +1.4
4,528,451 - +0.2
4,528,451 - -1.0
4,528,451 - +0.5
4,528,451 - +0.2
4,528,451 - +0.6
4,528,451 - +0.5
4,528,452 + -0.4
4,528,452 + +0.8
4,528,452 + +0.9
4,528,452 + +0.1
4,528,452 + +1.0
4,528,452 + +0.4
4,528,452 + +0.4
4,528,452 + +0.1
4,528,452 + +0.1
4,528,452 + +1.5
4,528,452 + +0.5
4,528,453 - +0.7
4,528,453 - +0.5
4,528,453 - +0.6
4,528,453 - +0.0
4,528,453 - -0.3
4,528,453 - +1.8
4,528,453 - +0.4
4,528,453 - +0.6
4,528,453 - +0.4
4,528,453 - +1.1
4,528,453 - +0.8
4,528,453 - +0.2
4,528,453 - -1.0
4,528,453 - +0.3
4,528,453 - -0.3
4,528,453 - +0.8
4,528,454 + -0.7
4,528,454 + -0.3
4,528,454 + +0.8
4,528,454 + +1.1
4,528,454 + -0.6
4,528,455 - +0.0
4,528,455 - -0.2
4,528,455 - +0.4
4,528,455 - +0.5
4,528,455 - +1.1
4,528,455 - -0.4
4,528,455 - +0.6
4,528,848 + PfGW456L13_4037 0.64 -1.2
4,528,848 + PfGW456L13_4037 0.64 -1.5
4,528,848 + PfGW456L13_4037 0.64 -3.4
4,528,849 - PfGW456L13_4037 0.64 +0.8
4,529,022 + -0.0
4,529,022 + -1.1
4,529,022 + -3.2
4,529,023 - +0.2
4,529,023 - -0.6
4,529,023 - -0.2
4,529,061 + +0.0
4,529,061 + +0.1
4,529,061 + -0.0
4,529,061 + -0.7

Or see this region's nucleotide sequence