Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3595

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3594 and PfGW456L13_3595 are separated by 128 nucleotidesPfGW456L13_3595 and PfGW456L13_3596 are separated by 53 nucleotidesPfGW456L13_3596 and PfGW456L13_3597 are separated by 133 nucleotides PfGW456L13_3594 - Putative transcriptional regulator LYSR-type, at 4,046,134 to 4,047,051 _3594 PfGW456L13_3595 - Citrate-sodium symport, at 4,047,180 to 4,048,526 _3595 PfGW456L13_3596 - Transcriptional regulator, AraC family, at 4,048,580 to 4,049,353 _3596 PfGW456L13_3597 - fosmidomycin resistance protein, at 4,049,487 to 4,050,707 _3597 Position (kb) 4047 4048 4049Strain fitness (log2 ratio) -2 -1 0 1 2at 4046.250 kb on - strand, within PfGW456L13_3594at 4046.250 kb on - strand, within PfGW456L13_3594at 4046.250 kb on - strand, within PfGW456L13_3594at 4046.392 kb on + strand, within PfGW456L13_3594at 4046.520 kb on - strand, within PfGW456L13_3594at 4046.782 kb on + strand, within PfGW456L13_3594at 4046.783 kb on - strand, within PfGW456L13_3594at 4046.936 kb on + strand, within PfGW456L13_3594at 4047.193 kb on - strandat 4047.265 kb on - strandat 4047.318 kb on + strand, within PfGW456L13_3595at 4047.319 kb on - strand, within PfGW456L13_3595at 4047.319 kb on - strand, within PfGW456L13_3595at 4047.552 kb on + strand, within PfGW456L13_3595at 4047.553 kb on - strand, within PfGW456L13_3595at 4047.789 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.822 kb on + strand, within PfGW456L13_3595at 4047.823 kb on - strand, within PfGW456L13_3595at 4047.823 kb on - strand, within PfGW456L13_3595at 4047.823 kb on - strand, within PfGW456L13_3595at 4047.823 kb on - strand, within PfGW456L13_3595at 4047.823 kb on - strand, within PfGW456L13_3595at 4047.992 kb on + strand, within PfGW456L13_3595at 4048.121 kb on + strand, within PfGW456L13_3595at 4048.122 kb on - strand, within PfGW456L13_3595at 4048.122 kb on - strand, within PfGW456L13_3595at 4048.125 kb on + strand, within PfGW456L13_3595at 4048.125 kb on + strand, within PfGW456L13_3595at 4048.126 kb on - strand, within PfGW456L13_3595at 4048.126 kb on - strand, within PfGW456L13_3595at 4048.230 kb on + strand, within PfGW456L13_3595at 4048.230 kb on + strand, within PfGW456L13_3595at 4048.231 kb on - strand, within PfGW456L13_3595at 4048.231 kb on - strand, within PfGW456L13_3595at 4048.231 kb on - strand, within PfGW456L13_3595at 4048.231 kb on - strand, within PfGW456L13_3595at 4048.272 kb on + strand, within PfGW456L13_3595at 4048.347 kb on + strand, within PfGW456L13_3595at 4048.348 kb on - strand, within PfGW456L13_3595at 4048.348 kb on - strand, within PfGW456L13_3595at 4048.348 kb on - strand, within PfGW456L13_3595at 4048.504 kb on + strandat 4048.862 kb on - strand, within PfGW456L13_3596at 4048.876 kb on + strand, within PfGW456L13_3596at 4048.876 kb on + strand, within PfGW456L13_3596at 4048.876 kb on + strand, within PfGW456L13_3596at 4048.876 kb on + strandat 4048.876 kb on + strand, within PfGW456L13_3596at 4048.877 kb on - strand, within PfGW456L13_3596at 4049.207 kb on + strand, within PfGW456L13_3596at 4049.208 kb on - strand, within PfGW456L13_3596at 4049.208 kb on - strand, within PfGW456L13_3596at 4049.208 kb on - strand, within PfGW456L13_3596at 4049.223 kb on + strand, within PfGW456L13_3596at 4049.223 kb on + strand, within PfGW456L13_3596at 4049.224 kb on - strand, within PfGW456L13_3596at 4049.415 kb on - strandat 4049.487 kb on - strandat 4049.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,046,250 - PfGW456L13_3594 0.13 +0.5
4,046,250 - PfGW456L13_3594 0.13 +2.1
4,046,250 - PfGW456L13_3594 0.13 -0.2
4,046,392 + PfGW456L13_3594 0.28 -0.0
4,046,520 - PfGW456L13_3594 0.42 -0.1
4,046,782 + PfGW456L13_3594 0.71 -0.3
4,046,783 - PfGW456L13_3594 0.71 -0.6
4,046,936 + PfGW456L13_3594 0.87 +0.5
4,047,193 - -0.3
4,047,265 - +0.7
4,047,318 + PfGW456L13_3595 0.10 +2.7
4,047,319 - PfGW456L13_3595 0.10 +1.2
4,047,319 - PfGW456L13_3595 0.10 +0.5
4,047,552 + PfGW456L13_3595 0.28 +1.3
4,047,553 - PfGW456L13_3595 0.28 +0.9
4,047,789 + PfGW456L13_3595 0.45 +0.8
4,047,822 + PfGW456L13_3595 0.48 +0.5
4,047,822 + PfGW456L13_3595 0.48 +0.6
4,047,822 + PfGW456L13_3595 0.48 -0.3
4,047,822 + PfGW456L13_3595 0.48 -0.4
4,047,822 + PfGW456L13_3595 0.48 +0.2
4,047,822 + PfGW456L13_3595 0.48 -0.8
4,047,822 + PfGW456L13_3595 0.48 -0.5
4,047,822 + PfGW456L13_3595 0.48 +1.1
4,047,823 - PfGW456L13_3595 0.48 +1.1
4,047,823 - PfGW456L13_3595 0.48 -1.9
4,047,823 - PfGW456L13_3595 0.48 +0.7
4,047,823 - PfGW456L13_3595 0.48 +0.5
4,047,823 - PfGW456L13_3595 0.48 +0.8
4,047,992 + PfGW456L13_3595 0.60 -0.6
4,048,121 + PfGW456L13_3595 0.70 -0.7
4,048,122 - PfGW456L13_3595 0.70 +1.0
4,048,122 - PfGW456L13_3595 0.70 -1.1
4,048,125 + PfGW456L13_3595 0.70 +0.6
4,048,125 + PfGW456L13_3595 0.70 -0.2
4,048,126 - PfGW456L13_3595 0.70 +0.9
4,048,126 - PfGW456L13_3595 0.70 +1.1
4,048,230 + PfGW456L13_3595 0.78 -1.6
4,048,230 + PfGW456L13_3595 0.78 +0.1
4,048,231 - PfGW456L13_3595 0.78 -0.1
4,048,231 - PfGW456L13_3595 0.78 +0.4
4,048,231 - PfGW456L13_3595 0.78 +1.8
4,048,231 - PfGW456L13_3595 0.78 +0.6
4,048,272 + PfGW456L13_3595 0.81 +0.3
4,048,347 + PfGW456L13_3595 0.87 -0.5
4,048,348 - PfGW456L13_3595 0.87 +0.2
4,048,348 - PfGW456L13_3595 0.87 -1.2
4,048,348 - PfGW456L13_3595 0.87 -0.5
4,048,504 + -1.5
4,048,862 - PfGW456L13_3596 0.36 +0.2
4,048,876 + PfGW456L13_3596 0.38 +0.0
4,048,876 + PfGW456L13_3596 0.38 -0.3
4,048,876 + PfGW456L13_3596 0.38 +0.1
4,048,876 + -2.1
4,048,876 + PfGW456L13_3596 0.38 -0.3
4,048,877 - PfGW456L13_3596 0.38 -0.7
4,049,207 + PfGW456L13_3596 0.81 +1.4
4,049,208 - PfGW456L13_3596 0.81 -0.2
4,049,208 - PfGW456L13_3596 0.81 +0.4
4,049,208 - PfGW456L13_3596 0.81 -0.2
4,049,223 + PfGW456L13_3596 0.83 -1.2
4,049,223 + PfGW456L13_3596 0.83 -0.6
4,049,224 - PfGW456L13_3596 0.83 +0.5
4,049,415 - +0.1
4,049,487 - -0.1
4,049,487 - +0.4

Or see this region's nucleotide sequence