Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3442

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3441 and PfGW456L13_3442 are separated by 60 nucleotidesPfGW456L13_3442 and PfGW456L13_3443 overlap by 4 nucleotides PfGW456L13_3441 - Choline dehydrogenase (EC 1.1.99.1), at 3,863,278 to 3,864,897 _3441 PfGW456L13_3442 - hypothetical protein, at 3,864,958 to 3,865,167 _3442 PfGW456L13_3443 - putative cytochrome P450 hydroxylase, at 3,865,164 to 3,866,444 _3443 Position (kb) 3864 3865 3866Strain fitness (log2 ratio) -1 0 1at 3864.005 kb on + strand, within PfGW456L13_3441at 3864.005 kb on + strand, within PfGW456L13_3441at 3864.005 kb on + strand, within PfGW456L13_3441at 3864.006 kb on - strand, within PfGW456L13_3441at 3864.052 kb on + strand, within PfGW456L13_3441at 3864.458 kb on - strand, within PfGW456L13_3441at 3864.458 kb on - strand, within PfGW456L13_3441at 3864.614 kb on + strand, within PfGW456L13_3441at 3864.614 kb on + strandat 3864.614 kb on + strand, within PfGW456L13_3441at 3864.614 kb on + strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.705 kb on - strand, within PfGW456L13_3441at 3864.733 kb on - strand, within PfGW456L13_3441at 3864.878 kb on + strandat 3864.878 kb on + strandat 3864.879 kb on - strandat 3864.879 kb on - strandat 3864.884 kb on + strandat 3864.912 kb on + strandat 3864.912 kb on + strandat 3864.913 kb on - strandat 3864.924 kb on + strandat 3864.925 kb on - strandat 3864.978 kb on + strandat 3864.979 kb on - strand, within PfGW456L13_3442at 3865.076 kb on + strand, within PfGW456L13_3442at 3865.098 kb on - strand, within PfGW456L13_3442at 3865.415 kb on + strand, within PfGW456L13_3443at 3865.568 kb on - strand, within PfGW456L13_3443at 3865.777 kb on + strand, within PfGW456L13_3443at 3865.778 kb on - strand, within PfGW456L13_3443at 3866.110 kb on + strand, within PfGW456L13_3443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
3,864,005 + PfGW456L13_3441 0.45 -0.8
3,864,005 + PfGW456L13_3441 0.45 +0.9
3,864,005 + PfGW456L13_3441 0.45 -0.3
3,864,006 - PfGW456L13_3441 0.45 +0.7
3,864,052 + PfGW456L13_3441 0.48 -0.3
3,864,458 - PfGW456L13_3441 0.73 +0.9
3,864,458 - PfGW456L13_3441 0.73 +0.7
3,864,614 + PfGW456L13_3441 0.82 +0.5
3,864,614 + +1.6
3,864,614 + PfGW456L13_3441 0.82 +0.0
3,864,614 + PfGW456L13_3441 0.82 +0.7
3,864,615 - PfGW456L13_3441 0.83 +0.0
3,864,615 - PfGW456L13_3441 0.83 +1.1
3,864,615 - PfGW456L13_3441 0.83 +0.4
3,864,705 - PfGW456L13_3441 0.88 +0.6
3,864,733 - PfGW456L13_3441 0.90 -1.1
3,864,878 + -0.2
3,864,878 + -0.3
3,864,879 - +0.6
3,864,879 - +0.2
3,864,884 + +1.2
3,864,912 + -0.6
3,864,912 + +0.2
3,864,913 - -0.8
3,864,924 + -0.4
3,864,925 - -0.2
3,864,978 + -0.2
3,864,979 - PfGW456L13_3442 0.10 -1.0
3,865,076 + PfGW456L13_3442 0.56 -1.0
3,865,098 - PfGW456L13_3442 0.67 -1.0
3,865,415 + PfGW456L13_3443 0.20 +0.2
3,865,568 - PfGW456L13_3443 0.32 +0.7
3,865,777 + PfGW456L13_3443 0.48 +0.4
3,865,778 - PfGW456L13_3443 0.48 +0.4
3,866,110 + PfGW456L13_3443 0.74 -0.1

Or see this region's nucleotide sequence