Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3441 and PfGW456L13_3442 are separated by 60 nucleotides PfGW456L13_3442 and PfGW456L13_3443 overlap by 4 nucleotides
PfGW456L13_3441 - Choline dehydrogenase (EC 1.1.99.1), at 3,863,278 to 3,864,897
_3441
PfGW456L13_3442 - hypothetical protein, at 3,864,958 to 3,865,167
_3442
PfGW456L13_3443 - putative cytochrome P450 hydroxylase, at 3,865,164 to 3,866,444
_3443
Position (kb)
3864
3865
3866 Strain fitness (log2 ratio)
-1
0
1 at 3864.005 kb on + strand, within PfGW456L13_3441 at 3864.005 kb on + strand, within PfGW456L13_3441 at 3864.005 kb on + strand, within PfGW456L13_3441 at 3864.006 kb on - strand, within PfGW456L13_3441 at 3864.052 kb on + strand, within PfGW456L13_3441 at 3864.458 kb on - strand, within PfGW456L13_3441 at 3864.458 kb on - strand, within PfGW456L13_3441 at 3864.614 kb on + strand, within PfGW456L13_3441 at 3864.614 kb on + strand at 3864.614 kb on + strand, within PfGW456L13_3441 at 3864.614 kb on + strand, within PfGW456L13_3441 at 3864.615 kb on - strand, within PfGW456L13_3441 at 3864.615 kb on - strand, within PfGW456L13_3441 at 3864.615 kb on - strand, within PfGW456L13_3441 at 3864.705 kb on - strand, within PfGW456L13_3441 at 3864.733 kb on - strand, within PfGW456L13_3441 at 3864.878 kb on + strand at 3864.878 kb on + strand at 3864.879 kb on - strand at 3864.879 kb on - strand at 3864.884 kb on + strand at 3864.912 kb on + strand at 3864.912 kb on + strand at 3864.913 kb on - strand at 3864.924 kb on + strand at 3864.925 kb on - strand at 3864.978 kb on + strand at 3864.979 kb on - strand, within PfGW456L13_3442 at 3865.076 kb on + strand, within PfGW456L13_3442 at 3865.098 kb on - strand, within PfGW456L13_3442 at 3865.415 kb on + strand, within PfGW456L13_3443 at 3865.568 kb on - strand, within PfGW456L13_3443 at 3865.777 kb on + strand, within PfGW456L13_3443 at 3865.778 kb on - strand, within PfGW456L13_3443 at 3866.110 kb on + strand, within PfGW456L13_3443
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,864,005 + PfGW456L13_3441 0.45 -0.8 3,864,005 + PfGW456L13_3441 0.45 +0.9 3,864,005 + PfGW456L13_3441 0.45 -0.3 3,864,006 - PfGW456L13_3441 0.45 +0.7 3,864,052 + PfGW456L13_3441 0.48 -0.3 3,864,458 - PfGW456L13_3441 0.73 +0.9 3,864,458 - PfGW456L13_3441 0.73 +0.7 3,864,614 + PfGW456L13_3441 0.82 +0.5 3,864,614 + +1.6 3,864,614 + PfGW456L13_3441 0.82 +0.0 3,864,614 + PfGW456L13_3441 0.82 +0.7 3,864,615 - PfGW456L13_3441 0.83 +0.0 3,864,615 - PfGW456L13_3441 0.83 +1.1 3,864,615 - PfGW456L13_3441 0.83 +0.4 3,864,705 - PfGW456L13_3441 0.88 +0.6 3,864,733 - PfGW456L13_3441 0.90 -1.1 3,864,878 + -0.2 3,864,878 + -0.3 3,864,879 - +0.6 3,864,879 - +0.2 3,864,884 + +1.2 3,864,912 + -0.6 3,864,912 + +0.2 3,864,913 - -0.8 3,864,924 + -0.4 3,864,925 - -0.2 3,864,978 + -0.2 3,864,979 - PfGW456L13_3442 0.10 -1.0 3,865,076 + PfGW456L13_3442 0.56 -1.0 3,865,098 - PfGW456L13_3442 0.67 -1.0 3,865,415 + PfGW456L13_3443 0.20 +0.2 3,865,568 - PfGW456L13_3443 0.32 +0.7 3,865,777 + PfGW456L13_3443 0.48 +0.4 3,865,778 - PfGW456L13_3443 0.48 +0.4 3,866,110 + PfGW456L13_3443 0.74 -0.1
Or see this region's nucleotide sequence