Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2685

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2684 and PfGW456L13_2685 are separated by 167 nucleotidesPfGW456L13_2685 and PfGW456L13_2686 are separated by 41 nucleotidesPfGW456L13_2686 and PfGW456L13_2687 are separated by 404 nucleotides PfGW456L13_2684 - Lipoate synthase, at 2,982,879 to 2,983,868 _2684 PfGW456L13_2685 - Glycine hydroxymethyltransferase (EC 2.1.2.1) (from data), at 2,984,036 to 2,985,292 _2685 PfGW456L13_2686 - Glycine cleavage system H protein, at 2,985,334 to 2,985,717 _2686 PfGW456L13_2687 - transcriptional regulator, MerR family, at 2,986,122 to 2,987,630 _2687 Position (kb) 2984 2985 2986Strain fitness (log2 ratio) -2 -1 0 1at 2983.060 kb on + strand, within PfGW456L13_2684at 2983.249 kb on + strand, within PfGW456L13_2684at 2983.249 kb on + strand, within PfGW456L13_2684at 2983.249 kb on + strand, within PfGW456L13_2684at 2983.250 kb on - strand, within PfGW456L13_2684at 2983.465 kb on + strand, within PfGW456L13_2684at 2983.465 kb on + strand, within PfGW456L13_2684at 2983.465 kb on + strand, within PfGW456L13_2684at 2983.465 kb on + strand, within PfGW456L13_2684at 2983.891 kb on + strandat 2983.892 kb on - strandat 2983.892 kb on - strandat 2983.969 kb on + strandat 2983.969 kb on + strandat 2983.970 kb on - strandat 2984.046 kb on + strandat 2984.066 kb on + strandat 2984.433 kb on + strand, within PfGW456L13_2685at 2984.433 kb on + strand, within PfGW456L13_2685at 2984.434 kb on - strand, within PfGW456L13_2685at 2984.703 kb on + strand, within PfGW456L13_2685at 2984.703 kb on + strand, within PfGW456L13_2685at 2984.704 kb on - strand, within PfGW456L13_2685at 2984.761 kb on - strand, within PfGW456L13_2685at 2984.826 kb on + strand, within PfGW456L13_2685at 2984.826 kb on + strand, within PfGW456L13_2685at 2984.874 kb on + strand, within PfGW456L13_2685at 2984.875 kb on - strand, within PfGW456L13_2685at 2984.875 kb on - strand, within PfGW456L13_2685at 2985.025 kb on - strand, within PfGW456L13_2685at 2985.071 kb on + strand, within PfGW456L13_2685at 2985.071 kb on + strand, within PfGW456L13_2685at 2985.129 kb on + strand, within PfGW456L13_2685at 2985.130 kb on - strand, within PfGW456L13_2685at 2985.130 kb on - strand, within PfGW456L13_2685at 2985.180 kb on + strandat 2985.180 kb on + strandat 2985.180 kb on + strandat 2985.180 kb on + strandat 2985.181 kb on - strandat 2985.181 kb on - strandat 2985.181 kb on - strandat 2985.181 kb on - strandat 2985.181 kb on - strandat 2985.261 kb on + strandat 2985.369 kb on - strandat 2985.385 kb on + strand, within PfGW456L13_2686at 2985.385 kb on + strand, within PfGW456L13_2686at 2985.386 kb on - strand, within PfGW456L13_2686at 2985.700 kb on - strandat 2986.144 kb on + strandat 2986.144 kb on + strandat 2986.145 kb on - strandat 2986.173 kb on - strandat 2986.217 kb on - strandat 2986.217 kb on - strandat 2986.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,983,060 + PfGW456L13_2684 0.18 +0.5
2,983,249 + PfGW456L13_2684 0.37 +1.5
2,983,249 + PfGW456L13_2684 0.37 +0.4
2,983,249 + PfGW456L13_2684 0.37 +0.2
2,983,250 - PfGW456L13_2684 0.37 +0.9
2,983,465 + PfGW456L13_2684 0.59 -0.7
2,983,465 + PfGW456L13_2684 0.59 -0.0
2,983,465 + PfGW456L13_2684 0.59 +0.3
2,983,465 + PfGW456L13_2684 0.59 -0.5
2,983,891 + -0.5
2,983,892 - +0.2
2,983,892 - +0.5
2,983,969 + -0.5
2,983,969 + -1.5
2,983,970 - -0.7
2,984,046 + +0.6
2,984,066 + -1.7
2,984,433 + PfGW456L13_2685 0.32 -0.2
2,984,433 + PfGW456L13_2685 0.32 -0.7
2,984,434 - PfGW456L13_2685 0.32 -0.1
2,984,703 + PfGW456L13_2685 0.53 -0.2
2,984,703 + PfGW456L13_2685 0.53 +0.1
2,984,704 - PfGW456L13_2685 0.53 -0.7
2,984,761 - PfGW456L13_2685 0.58 -0.1
2,984,826 + PfGW456L13_2685 0.63 +0.5
2,984,826 + PfGW456L13_2685 0.63 -1.3
2,984,874 + PfGW456L13_2685 0.67 +0.1
2,984,875 - PfGW456L13_2685 0.67 -0.7
2,984,875 - PfGW456L13_2685 0.67 +0.8
2,985,025 - PfGW456L13_2685 0.79 +1.2
2,985,071 + PfGW456L13_2685 0.82 -1.3
2,985,071 + PfGW456L13_2685 0.82 +0.1
2,985,129 + PfGW456L13_2685 0.87 +0.8
2,985,130 - PfGW456L13_2685 0.87 +0.7
2,985,130 - PfGW456L13_2685 0.87 +1.0
2,985,180 + +0.3
2,985,180 + -0.0
2,985,180 + -0.1
2,985,180 + +0.3
2,985,181 - +0.2
2,985,181 - -1.6
2,985,181 - -2.2
2,985,181 - -0.2
2,985,181 - +0.5
2,985,261 + +0.3
2,985,369 - +0.3
2,985,385 + PfGW456L13_2686 0.13 +0.9
2,985,385 + PfGW456L13_2686 0.13 +0.6
2,985,386 - PfGW456L13_2686 0.14 +0.3
2,985,700 - +0.1
2,986,144 + -0.8
2,986,144 + +1.5
2,986,145 - +0.0
2,986,173 - -0.1
2,986,217 - -0.6
2,986,217 - +0.9
2,986,226 - +0.0

Or see this region's nucleotide sequence