Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2657

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2656 and PfGW456L13_2657 are separated by 114 nucleotidesPfGW456L13_2657 and PfGW456L13_2658 are separated by 91 nucleotides PfGW456L13_2656 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 2,958,449 to 2,959,843 _2656 PfGW456L13_2657 - Glutathione S-transferase, omega (EC 2.5.1.18), at 2,959,958 to 2,960,959 _2657 PfGW456L13_2658 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 2,961,051 to 2,962,052 _2658 Position (kb) 2959 2960 2961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2959.103 kb on + strand, within PfGW456L13_2656at 2959.183 kb on - strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.187 kb on + strand, within PfGW456L13_2656at 2959.188 kb on - strand, within PfGW456L13_2656at 2959.188 kb on - strand, within PfGW456L13_2656at 2959.188 kb on - strand, within PfGW456L13_2656at 2959.592 kb on + strand, within PfGW456L13_2656at 2959.592 kb on + strand, within PfGW456L13_2656at 2959.592 kb on + strand, within PfGW456L13_2656at 2959.592 kb on + strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2959.593 kb on - strand, within PfGW456L13_2656at 2960.077 kb on - strand, within PfGW456L13_2657at 2960.077 kb on - strand, within PfGW456L13_2657at 2960.077 kb on - strand, within PfGW456L13_2657at 2960.079 kb on + strand, within PfGW456L13_2657at 2960.080 kb on - strand, within PfGW456L13_2657at 2960.133 kb on + strand, within PfGW456L13_2657at 2960.133 kb on + strand, within PfGW456L13_2657at 2960.134 kb on - strand, within PfGW456L13_2657at 2960.134 kb on - strand, within PfGW456L13_2657at 2960.134 kb on - strand, within PfGW456L13_2657at 2960.206 kb on - strand, within PfGW456L13_2657at 2960.206 kb on - strand, within PfGW456L13_2657at 2960.206 kb on - strand, within PfGW456L13_2657at 2960.208 kb on + strand, within PfGW456L13_2657at 2960.209 kb on - strand, within PfGW456L13_2657at 2960.209 kb on - strand, within PfGW456L13_2657at 2960.209 kb on - strand, within PfGW456L13_2657at 2960.266 kb on - strand, within PfGW456L13_2657at 2960.281 kb on - strand, within PfGW456L13_2657at 2960.298 kb on - strand, within PfGW456L13_2657at 2960.349 kb on + strand, within PfGW456L13_2657at 2960.349 kb on + strand, within PfGW456L13_2657at 2960.350 kb on - strand, within PfGW456L13_2657at 2960.350 kb on - strand, within PfGW456L13_2657at 2960.350 kb on - strand, within PfGW456L13_2657at 2960.366 kb on - strand, within PfGW456L13_2657at 2960.382 kb on + strand, within PfGW456L13_2657at 2960.383 kb on - strand, within PfGW456L13_2657at 2960.586 kb on + strand, within PfGW456L13_2657at 2960.586 kb on + strand, within PfGW456L13_2657at 2960.587 kb on - strand, within PfGW456L13_2657at 2960.587 kb on - strand, within PfGW456L13_2657at 2960.587 kb on - strand, within PfGW456L13_2657at 2960.607 kb on + strand, within PfGW456L13_2657at 2960.607 kb on + strand, within PfGW456L13_2657at 2960.608 kb on - strand, within PfGW456L13_2657at 2960.608 kb on - strand, within PfGW456L13_2657at 2960.790 kb on + strand, within PfGW456L13_2657at 2960.790 kb on + strand, within PfGW456L13_2657at 2960.790 kb on + strand, within PfGW456L13_2657at 2960.790 kb on + strand, within PfGW456L13_2657at 2960.790 kb on + strand, within PfGW456L13_2657at 2960.791 kb on - strand, within PfGW456L13_2657at 2960.791 kb on - strand, within PfGW456L13_2657at 2960.791 kb on - strand, within PfGW456L13_2657at 2960.800 kb on - strand, within PfGW456L13_2657at 2960.800 kb on - strand, within PfGW456L13_2657at 2960.920 kb on - strandat 2961.000 kb on + strandat 2961.000 kb on + strandat 2961.001 kb on - strandat 2961.052 kb on + strandat 2961.053 kb on - strandat 2961.298 kb on + strand, within PfGW456L13_2658at 2961.299 kb on - strand, within PfGW456L13_2658at 2961.366 kb on - strand, within PfGW456L13_2658at 2961.602 kb on + strand, within PfGW456L13_2658at 2961.602 kb on + strand, within PfGW456L13_2658at 2961.646 kb on + strand, within PfGW456L13_2658at 2961.646 kb on + strand, within PfGW456L13_2658at 2961.646 kb on + strand, within PfGW456L13_2658at 2961.647 kb on - strand, within PfGW456L13_2658at 2961.647 kb on - strand, within PfGW456L13_2658at 2961.730 kb on + strand, within PfGW456L13_2658at 2961.730 kb on + strand, within PfGW456L13_2658at 2961.730 kb on + strand, within PfGW456L13_2658at 2961.731 kb on - strand, within PfGW456L13_2658at 2961.731 kb on - strand, within PfGW456L13_2658at 2961.731 kb on - strand, within PfGW456L13_2658at 2961.760 kb on + strand, within PfGW456L13_2658at 2961.760 kb on + strand, within PfGW456L13_2658at 2961.760 kb on + strand, within PfGW456L13_2658at 2961.761 kb on - strand, within PfGW456L13_2658at 2961.761 kb on - strand, within PfGW456L13_2658at 2961.761 kb on - strand, within PfGW456L13_2658

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,959,103 + PfGW456L13_2656 0.47 -2.4
2,959,183 - PfGW456L13_2656 0.53 +0.7
2,959,187 + PfGW456L13_2656 0.53 -4.7
2,959,187 + PfGW456L13_2656 0.53 -3.7
2,959,187 + PfGW456L13_2656 0.53 -3.0
2,959,187 + PfGW456L13_2656 0.53 -3.3
2,959,187 + PfGW456L13_2656 0.53 -0.3
2,959,187 + PfGW456L13_2656 0.53 -3.1
2,959,188 - PfGW456L13_2656 0.53 -1.3
2,959,188 - PfGW456L13_2656 0.53 -1.3
2,959,188 - PfGW456L13_2656 0.53 -2.7
2,959,592 + PfGW456L13_2656 0.82 -1.9
2,959,592 + PfGW456L13_2656 0.82 -3.4
2,959,592 + PfGW456L13_2656 0.82 -2.6
2,959,592 + PfGW456L13_2656 0.82 -1.9
2,959,593 - PfGW456L13_2656 0.82 -0.9
2,959,593 - PfGW456L13_2656 0.82 -1.9
2,959,593 - PfGW456L13_2656 0.82 -2.4
2,959,593 - PfGW456L13_2656 0.82 -2.7
2,959,593 - PfGW456L13_2656 0.82 -3.9
2,959,593 - PfGW456L13_2656 0.82 -2.3
2,959,593 - PfGW456L13_2656 0.82 -1.6
2,960,077 - PfGW456L13_2657 0.12 +0.1
2,960,077 - PfGW456L13_2657 0.12 +1.4
2,960,077 - PfGW456L13_2657 0.12 +0.3
2,960,079 + PfGW456L13_2657 0.12 +1.0
2,960,080 - PfGW456L13_2657 0.12 -0.5
2,960,133 + PfGW456L13_2657 0.17 +0.9
2,960,133 + PfGW456L13_2657 0.17 +1.0
2,960,134 - PfGW456L13_2657 0.18 -0.1
2,960,134 - PfGW456L13_2657 0.18 +0.3
2,960,134 - PfGW456L13_2657 0.18 +1.3
2,960,206 - PfGW456L13_2657 0.25 +0.9
2,960,206 - PfGW456L13_2657 0.25 -0.6
2,960,206 - PfGW456L13_2657 0.25 +0.7
2,960,208 + PfGW456L13_2657 0.25 +1.2
2,960,209 - PfGW456L13_2657 0.25 -0.5
2,960,209 - PfGW456L13_2657 0.25 -0.1
2,960,209 - PfGW456L13_2657 0.25 -0.1
2,960,266 - PfGW456L13_2657 0.31 +0.1
2,960,281 - PfGW456L13_2657 0.32 -1.3
2,960,298 - PfGW456L13_2657 0.34 -0.7
2,960,349 + PfGW456L13_2657 0.39 -0.1
2,960,349 + PfGW456L13_2657 0.39 -0.2
2,960,350 - PfGW456L13_2657 0.39 +0.6
2,960,350 - PfGW456L13_2657 0.39 -0.4
2,960,350 - PfGW456L13_2657 0.39 -0.1
2,960,366 - PfGW456L13_2657 0.41 +0.3
2,960,382 + PfGW456L13_2657 0.42 -0.2
2,960,383 - PfGW456L13_2657 0.42 -0.0
2,960,586 + PfGW456L13_2657 0.63 -0.4
2,960,586 + PfGW456L13_2657 0.63 +0.3
2,960,587 - PfGW456L13_2657 0.63 -0.6
2,960,587 - PfGW456L13_2657 0.63 -0.7
2,960,587 - PfGW456L13_2657 0.63 -0.2
2,960,607 + PfGW456L13_2657 0.65 -0.5
2,960,607 + PfGW456L13_2657 0.65 -0.4
2,960,608 - PfGW456L13_2657 0.65 -1.1
2,960,608 - PfGW456L13_2657 0.65 +2.1
2,960,790 + PfGW456L13_2657 0.83 +0.6
2,960,790 + PfGW456L13_2657 0.83 -1.2
2,960,790 + PfGW456L13_2657 0.83 -0.4
2,960,790 + PfGW456L13_2657 0.83 +0.7
2,960,790 + PfGW456L13_2657 0.83 -0.3
2,960,791 - PfGW456L13_2657 0.83 -1.3
2,960,791 - PfGW456L13_2657 0.83 +0.6
2,960,791 - PfGW456L13_2657 0.83 +1.8
2,960,800 - PfGW456L13_2657 0.84 -2.1
2,960,800 - PfGW456L13_2657 0.84 +0.1
2,960,920 - +0.3
2,961,000 + +0.4
2,961,000 + +0.1
2,961,001 - +0.5
2,961,052 + +0.6
2,961,053 - +0.3
2,961,298 + PfGW456L13_2658 0.25 -0.4
2,961,299 - PfGW456L13_2658 0.25 +0.1
2,961,366 - PfGW456L13_2658 0.31 -0.3
2,961,602 + PfGW456L13_2658 0.55 -1.1
2,961,602 + PfGW456L13_2658 0.55 +0.2
2,961,646 + PfGW456L13_2658 0.59 -0.9
2,961,646 + PfGW456L13_2658 0.59 -0.9
2,961,646 + PfGW456L13_2658 0.59 +0.6
2,961,647 - PfGW456L13_2658 0.59 +0.3
2,961,647 - PfGW456L13_2658 0.59 -0.7
2,961,730 + PfGW456L13_2658 0.68 +0.9
2,961,730 + PfGW456L13_2658 0.68 -0.2
2,961,730 + PfGW456L13_2658 0.68 +0.1
2,961,731 - PfGW456L13_2658 0.68 -1.0
2,961,731 - PfGW456L13_2658 0.68 -0.5
2,961,731 - PfGW456L13_2658 0.68 +0.3
2,961,760 + PfGW456L13_2658 0.71 -0.3
2,961,760 + PfGW456L13_2658 0.71 +0.7
2,961,760 + PfGW456L13_2658 0.71 +0.2
2,961,761 - PfGW456L13_2658 0.71 +1.3
2,961,761 - PfGW456L13_2658 0.71 -0.3
2,961,761 - PfGW456L13_2658 0.71 -0.1

Or see this region's nucleotide sequence