Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2579 and PfGW456L13_2580 are separated by 48 nucleotides PfGW456L13_2580 and PfGW456L13_2581 are separated by 107 nucleotides PfGW456L13_2581 and PfGW456L13_2582 overlap by 4 nucleotides
PfGW456L13_2579 - AFG1-like ATPase, at 2,866,871 to 2,867,809
_2579
PfGW456L13_2580 - hypothetical protein, at 2,867,858 to 2,868,052
_2580
PfGW456L13_2581 - Transmembrane regulator protein PrtR, at 2,868,160 to 2,868,912
_2581
PfGW456L13_2582 - RNA polymerase sigma-54 factor RpoN, at 2,868,909 to 2,869,415
_2582
Position (kb)
2867
2868
2869 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.001 kb on + strand, within PfGW456L13_2579 at 2867.002 kb on - strand, within PfGW456L13_2579 at 2867.002 kb on - strand, within PfGW456L13_2579 at 2867.002 kb on - strand, within PfGW456L13_2579 at 2867.006 kb on + strand, within PfGW456L13_2579 at 2867.006 kb on + strand, within PfGW456L13_2579 at 2867.006 kb on + strand, within PfGW456L13_2579 at 2867.006 kb on + strand, within PfGW456L13_2579 at 2867.006 kb on + strand, within PfGW456L13_2579 at 2867.007 kb on - strand, within PfGW456L13_2579 at 2867.007 kb on - strand, within PfGW456L13_2579 at 2867.007 kb on - strand, within PfGW456L13_2579 at 2867.007 kb on - strand, within PfGW456L13_2579 at 2867.007 kb on - strand, within PfGW456L13_2579 at 2867.023 kb on + strand, within PfGW456L13_2579 at 2867.023 kb on + strand, within PfGW456L13_2579 at 2867.024 kb on - strand, within PfGW456L13_2579 at 2867.024 kb on - strand, within PfGW456L13_2579 at 2867.024 kb on - strand, within PfGW456L13_2579 at 2867.024 kb on - strand, within PfGW456L13_2579 at 2867.112 kb on + strand, within PfGW456L13_2579 at 2867.112 kb on + strand, within PfGW456L13_2579 at 2867.113 kb on - strand, within PfGW456L13_2579 at 2867.155 kb on + strand, within PfGW456L13_2579 at 2867.156 kb on - strand, within PfGW456L13_2579 at 2867.156 kb on - strand, within PfGW456L13_2579 at 2867.203 kb on + strand, within PfGW456L13_2579 at 2867.207 kb on + strand, within PfGW456L13_2579 at 2867.286 kb on + strand, within PfGW456L13_2579 at 2867.286 kb on + strand, within PfGW456L13_2579 at 2867.377 kb on + strand, within PfGW456L13_2579 at 2867.415 kb on + strand, within PfGW456L13_2579 at 2867.751 kb on + strand at 2867.847 kb on + strand at 2867.848 kb on - strand at 2867.877 kb on + strand at 2867.877 kb on + strand at 2868.002 kb on - strand, within PfGW456L13_2580 at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.201 kb on + strand at 2868.202 kb on - strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.230 kb on + strand at 2868.231 kb on - strand at 2868.231 kb on - strand at 2868.249 kb on - strand, within PfGW456L13_2581 at 2868.323 kb on + strand, within PfGW456L13_2581 at 2868.357 kb on - strand, within PfGW456L13_2581 at 2868.697 kb on + strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.872 kb on + strand at 2868.872 kb on + strand at 2868.873 kb on - strand at 2868.873 kb on - strand at 2869.011 kb on + strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.039 kb on + strand, within PfGW456L13_2582
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,867,001 + PfGW456L13_2579 0.14 +0.7 2,867,001 + PfGW456L13_2579 0.14 -0.0 2,867,001 + PfGW456L13_2579 0.14 -1.1 2,867,001 + PfGW456L13_2579 0.14 -0.3 2,867,001 + PfGW456L13_2579 0.14 -0.3 2,867,001 + PfGW456L13_2579 0.14 -0.7 2,867,002 - PfGW456L13_2579 0.14 +0.3 2,867,002 - PfGW456L13_2579 0.14 -0.1 2,867,002 - PfGW456L13_2579 0.14 +0.1 2,867,006 + PfGW456L13_2579 0.14 +1.0 2,867,006 + PfGW456L13_2579 0.14 +0.3 2,867,006 + PfGW456L13_2579 0.14 -1.0 2,867,006 + PfGW456L13_2579 0.14 -0.2 2,867,006 + PfGW456L13_2579 0.14 -0.8 2,867,007 - PfGW456L13_2579 0.14 +0.2 2,867,007 - PfGW456L13_2579 0.14 +0.9 2,867,007 - PfGW456L13_2579 0.14 +0.9 2,867,007 - PfGW456L13_2579 0.14 -0.9 2,867,007 - PfGW456L13_2579 0.14 -1.6 2,867,023 + PfGW456L13_2579 0.16 -0.6 2,867,023 + PfGW456L13_2579 0.16 +0.7 2,867,024 - PfGW456L13_2579 0.16 -0.0 2,867,024 - PfGW456L13_2579 0.16 -0.1 2,867,024 - PfGW456L13_2579 0.16 -2.3 2,867,024 - PfGW456L13_2579 0.16 +0.3 2,867,112 + PfGW456L13_2579 0.26 -2.0 2,867,112 + PfGW456L13_2579 0.26 +1.7 2,867,113 - PfGW456L13_2579 0.26 -0.8 2,867,155 + PfGW456L13_2579 0.30 -0.4 2,867,156 - PfGW456L13_2579 0.30 +0.8 2,867,156 - PfGW456L13_2579 0.30 -0.9 2,867,203 + PfGW456L13_2579 0.35 -1.5 2,867,207 + PfGW456L13_2579 0.36 -1.0 2,867,286 + PfGW456L13_2579 0.44 -0.5 2,867,286 + PfGW456L13_2579 0.44 +0.3 2,867,377 + PfGW456L13_2579 0.54 +0.6 2,867,415 + PfGW456L13_2579 0.58 -0.5 2,867,751 + -1.1 2,867,847 + +0.2 2,867,848 - -0.7 2,867,877 + -0.1 2,867,877 + +0.2 2,868,002 - PfGW456L13_2580 0.74 +0.7 2,868,045 + -0.7 2,868,045 + +0.8 2,868,045 + -2.6 2,868,045 + -0.6 2,868,201 + +0.1 2,868,202 - +0.1 2,868,224 + -1.1 2,868,224 + +0.6 2,868,224 + -0.7 2,868,224 + -0.1 2,868,224 + -0.6 2,868,224 + -0.1 2,868,224 + -1.3 2,868,224 + +0.0 2,868,224 + -1.3 2,868,224 + -0.5 2,868,224 + +0.9 2,868,225 - -1.0 2,868,225 - +0.5 2,868,225 - +0.2 2,868,225 - -0.1 2,868,225 - -0.6 2,868,230 + -0.3 2,868,231 - +1.9 2,868,231 - -0.1 2,868,249 - PfGW456L13_2581 0.12 -0.8 2,868,323 + PfGW456L13_2581 0.22 -0.7 2,868,357 - PfGW456L13_2581 0.26 -0.4 2,868,697 + PfGW456L13_2581 0.71 -1.0 2,868,698 - PfGW456L13_2581 0.71 -1.3 2,868,698 - PfGW456L13_2581 0.71 -0.7 2,868,698 - PfGW456L13_2581 0.71 +0.5 2,868,872 + -1.0 2,868,872 + +0.7 2,868,873 - +1.2 2,868,873 - -0.8 2,869,011 + PfGW456L13_2582 0.20 +0.4 2,869,012 - PfGW456L13_2582 0.20 +0.3 2,869,012 - PfGW456L13_2582 0.20 -0.0 2,869,012 - PfGW456L13_2582 0.20 +0.8 2,869,039 + PfGW456L13_2582 0.26 +0.1
Or see this region's nucleotide sequence