Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1922

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1921 and PfGW456L13_1922 are separated by 236 nucleotidesPfGW456L13_1922 and PfGW456L13_1923 are separated by 424 nucleotidesPfGW456L13_1923 and PfGW456L13_1924 overlap by 2 nucleotidesPfGW456L13_1924 and PfGW456L13_1925 are separated by 195 nucleotides PfGW456L13_1921 - Methyl-accepting chemotaxis protein, at 2,114,977 to 2,116,296 _1921 PfGW456L13_1922 - Uncharacterized glutathione S-transferase-like protein, at 2,116,533 to 2,117,171 _1922 PfGW456L13_1923 - hypothetical protein, at 2,117,596 to 2,117,736 _1923 PfGW456L13_1924 - hypothetical protein, at 2,117,735 to 2,117,863 _1924 PfGW456L13_1925 - Gluconate utilization system Gnt-I transcriptional repressor, at 2,118,059 to 2,119,108 _1925 Position (kb) 2116 2117 2118Strain fitness (log2 ratio) -2 -1 0 1 2at 2115.669 kb on - strand, within PfGW456L13_1921at 2115.669 kb on - strand, within PfGW456L13_1921at 2115.685 kb on + strand, within PfGW456L13_1921at 2115.685 kb on + strand, within PfGW456L13_1921at 2115.685 kb on + strand, within PfGW456L13_1921at 2115.685 kb on + strand, within PfGW456L13_1921at 2115.685 kb on + strand, within PfGW456L13_1921at 2115.686 kb on - strand, within PfGW456L13_1921at 2115.686 kb on - strand, within PfGW456L13_1921at 2115.686 kb on - strand, within PfGW456L13_1921at 2115.686 kb on - strand, within PfGW456L13_1921at 2115.686 kb on - strand, within PfGW456L13_1921at 2115.718 kb on + strand, within PfGW456L13_1921at 2115.718 kb on + strand, within PfGW456L13_1921at 2115.719 kb on - strand, within PfGW456L13_1921at 2115.719 kb on - strand, within PfGW456L13_1921at 2115.744 kb on + strand, within PfGW456L13_1921at 2115.803 kb on + strand, within PfGW456L13_1921at 2115.804 kb on - strand, within PfGW456L13_1921at 2116.294 kb on + strandat 2116.294 kb on + strandat 2116.295 kb on - strandat 2116.408 kb on - strandat 2116.408 kb on - strandat 2116.408 kb on - strandat 2116.408 kb on - strandat 2116.408 kb on - strandat 2116.408 kb on - strandat 2116.460 kb on - strandat 2116.461 kb on + strandat 2116.461 kb on + strandat 2116.461 kb on + strandat 2116.462 kb on - strandat 2116.462 kb on - strandat 2116.462 kb on - strandat 2116.462 kb on - strandat 2116.502 kb on - strandat 2116.521 kb on + strandat 2116.522 kb on - strandat 2116.594 kb on + strandat 2116.594 kb on + strandat 2116.594 kb on + strandat 2116.595 kb on - strandat 2116.595 kb on - strandat 2116.595 kb on - strandat 2116.683 kb on - strand, within PfGW456L13_1922at 2116.683 kb on - strand, within PfGW456L13_1922at 2116.702 kb on + strand, within PfGW456L13_1922at 2116.702 kb on + strand, within PfGW456L13_1922at 2116.702 kb on + strand, within PfGW456L13_1922at 2116.702 kb on + strand, within PfGW456L13_1922at 2116.702 kb on + strand, within PfGW456L13_1922at 2116.703 kb on - strand, within PfGW456L13_1922at 2116.703 kb on - strand, within PfGW456L13_1922at 2116.703 kb on - strand, within PfGW456L13_1922at 2116.703 kb on - strand, within PfGW456L13_1922at 2116.758 kb on - strand, within PfGW456L13_1922at 2116.962 kb on - strand, within PfGW456L13_1922at 2116.962 kb on - strand, within PfGW456L13_1922at 2116.962 kb on - strand, within PfGW456L13_1922at 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.211 kb on + strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.212 kb on - strandat 2117.265 kb on + strandat 2117.265 kb on + strandat 2117.265 kb on + strandat 2117.265 kb on + strandat 2117.265 kb on + strandat 2117.265 kb on + strandat 2117.266 kb on - strandat 2117.266 kb on - strandat 2117.266 kb on - strandat 2117.274 kb on - strandat 2117.287 kb on - strandat 2117.336 kb on + strandat 2117.336 kb on + strandat 2117.337 kb on - strandat 2117.340 kb on + strandat 2117.341 kb on - strandat 2117.341 kb on - strandat 2117.341 kb on - strandat 2117.347 kb on - strandat 2117.378 kb on - strandat 2117.389 kb on + strandat 2117.390 kb on - strandat 2117.390 kb on - strandat 2117.390 kb on - strandat 2117.390 kb on - strandat 2117.438 kb on + strandat 2117.438 kb on + strandat 2117.439 kb on - strandat 2117.443 kb on + strandat 2117.443 kb on + strandat 2117.444 kb on - strandat 2117.481 kb on + strandat 2117.514 kb on + strandat 2117.524 kb on + strandat 2117.525 kb on - strandat 2117.525 kb on - strandat 2117.564 kb on - strandat 2117.564 kb on - strandat 2117.564 kb on - strandat 2117.564 kb on - strandat 2117.602 kb on + strandat 2117.603 kb on - strandat 2117.603 kb on - strandat 2117.935 kb on - strandat 2117.953 kb on + strandat 2117.954 kb on - strandat 2117.954 kb on - strandat 2117.954 kb on - strandat 2117.959 kb on + strandat 2117.960 kb on - strandat 2118.060 kb on + strandat 2118.060 kb on + strandat 2118.060 kb on + strandat 2118.060 kb on + strandat 2118.061 kb on - strandat 2118.061 kb on - strandat 2118.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,115,669 - PfGW456L13_1921 0.52 +0.4
2,115,669 - PfGW456L13_1921 0.52 -0.1
2,115,685 + PfGW456L13_1921 0.54 -0.5
2,115,685 + PfGW456L13_1921 0.54 +1.0
2,115,685 + PfGW456L13_1921 0.54 -0.2
2,115,685 + PfGW456L13_1921 0.54 +0.6
2,115,685 + PfGW456L13_1921 0.54 +0.4
2,115,686 - PfGW456L13_1921 0.54 -0.2
2,115,686 - PfGW456L13_1921 0.54 +1.0
2,115,686 - PfGW456L13_1921 0.54 +0.4
2,115,686 - PfGW456L13_1921 0.54 +1.0
2,115,686 - PfGW456L13_1921 0.54 +1.0
2,115,718 + PfGW456L13_1921 0.56 -0.6
2,115,718 + PfGW456L13_1921 0.56 -0.1
2,115,719 - PfGW456L13_1921 0.56 -0.1
2,115,719 - PfGW456L13_1921 0.56 -1.7
2,115,744 + PfGW456L13_1921 0.58 -0.4
2,115,803 + PfGW456L13_1921 0.63 -0.1
2,115,804 - PfGW456L13_1921 0.63 -0.1
2,116,294 + +2.1
2,116,294 + -0.5
2,116,295 - +0.9
2,116,408 - -0.4
2,116,408 - +0.5
2,116,408 - +1.3
2,116,408 - +0.5
2,116,408 - -0.1
2,116,408 - +0.9
2,116,460 - +0.3
2,116,461 + -0.9
2,116,461 + -2.0
2,116,461 + -0.7
2,116,462 - +0.6
2,116,462 - +0.2
2,116,462 - -0.3
2,116,462 - +0.4
2,116,502 - +0.2
2,116,521 + +0.9
2,116,522 - +0.1
2,116,594 + -1.1
2,116,594 + +1.2
2,116,594 + -0.4
2,116,595 - -1.6
2,116,595 - -0.6
2,116,595 - +0.1
2,116,683 - PfGW456L13_1922 0.23 -0.4
2,116,683 - PfGW456L13_1922 0.23 +0.5
2,116,702 + PfGW456L13_1922 0.26 +0.0
2,116,702 + PfGW456L13_1922 0.26 +0.4
2,116,702 + PfGW456L13_1922 0.26 +0.1
2,116,702 + PfGW456L13_1922 0.26 +1.1
2,116,702 + PfGW456L13_1922 0.26 +0.1
2,116,703 - PfGW456L13_1922 0.27 -0.1
2,116,703 - PfGW456L13_1922 0.27 +0.0
2,116,703 - PfGW456L13_1922 0.27 -0.3
2,116,703 - PfGW456L13_1922 0.27 -1.1
2,116,758 - PfGW456L13_1922 0.35 -0.1
2,116,962 - PfGW456L13_1922 0.67 +0.2
2,116,962 - PfGW456L13_1922 0.67 +0.8
2,116,962 - PfGW456L13_1922 0.67 -0.5
2,117,211 + +0.2
2,117,211 + -0.3
2,117,211 + +0.8
2,117,211 + -0.8
2,117,211 + +0.6
2,117,211 + +0.1
2,117,211 + -0.5
2,117,212 - +0.4
2,117,212 - -0.1
2,117,212 - +0.0
2,117,212 - +0.5
2,117,212 - +0.0
2,117,212 - +0.3
2,117,212 - -1.6
2,117,265 + -0.7
2,117,265 + -0.1
2,117,265 + -0.0
2,117,265 + -1.0
2,117,265 + +1.2
2,117,265 + -0.1
2,117,266 - -0.8
2,117,266 - -0.5
2,117,266 - -0.5
2,117,274 - +0.1
2,117,287 - -0.6
2,117,336 + +0.7
2,117,336 + +0.5
2,117,337 - -0.8
2,117,340 + +0.2
2,117,341 - -0.2
2,117,341 - -1.3
2,117,341 - +0.4
2,117,347 - -1.3
2,117,378 - -0.0
2,117,389 + +0.0
2,117,390 - -0.6
2,117,390 - -1.2
2,117,390 - +0.9
2,117,390 - +1.0
2,117,438 + +1.2
2,117,438 + +0.2
2,117,439 - -2.3
2,117,443 + -0.7
2,117,443 + +0.5
2,117,444 - -1.7
2,117,481 + +0.4
2,117,514 + -0.5
2,117,524 + -0.2
2,117,525 - +0.9
2,117,525 - -1.0
2,117,564 - -0.0
2,117,564 - +0.1
2,117,564 - -0.4
2,117,564 - -0.3
2,117,602 + -0.0
2,117,603 - +0.4
2,117,603 - +0.6
2,117,935 - +0.1
2,117,953 + +1.1
2,117,954 - -0.3
2,117,954 - +0.2
2,117,954 - +0.2
2,117,959 + -0.9
2,117,960 - +0.4
2,118,060 + +0.5
2,118,060 + -0.3
2,118,060 + +1.2
2,118,060 + -0.4
2,118,061 - +0.3
2,118,061 - -0.5
2,118,061 - +0.3

Or see this region's nucleotide sequence