Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1706

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1704 and PfGW456L13_1705 are separated by 40 nucleotidesPfGW456L13_1705 and PfGW456L13_1706 are separated by 88 nucleotidesPfGW456L13_1706 and PfGW456L13_1707 are separated by 99 nucleotidesPfGW456L13_1707 and PfGW456L13_1708 overlap by 1 nucleotides PfGW456L13_1704 - Ketosteroid isomerase-related protein, at 1,877,494 to 1,877,964 _1704 PfGW456L13_1705 - FIG00955494: hypothetical protein, at 1,878,005 to 1,878,325 _1705 PfGW456L13_1706 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 1,878,414 to 1,879,349 _1706 PfGW456L13_1707 - Glutaredoxin NrdH, at 1,879,449 to 1,879,799 _1707 PfGW456L13_1708 - Nucleoid-associated protein, at 1,879,799 to 1,880,803 _1708 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1877.422 kb on - strandat 1877.445 kb on - strandat 1877.530 kb on + strandat 1877.530 kb on + strandat 1877.575 kb on + strand, within PfGW456L13_1704at 1877.576 kb on - strand, within PfGW456L13_1704at 1877.576 kb on - strand, within PfGW456L13_1704at 1877.576 kb on - strand, within PfGW456L13_1704at 1877.640 kb on + strand, within PfGW456L13_1704at 1877.640 kb on + strand, within PfGW456L13_1704at 1877.640 kb on + strand, within PfGW456L13_1704at 1877.640 kb on + strand, within PfGW456L13_1704at 1877.640 kb on + strand, within PfGW456L13_1704at 1877.641 kb on - strand, within PfGW456L13_1704at 1877.641 kb on - strand, within PfGW456L13_1704at 1877.641 kb on - strand, within PfGW456L13_1704at 1877.740 kb on + strand, within PfGW456L13_1704at 1877.740 kb on + strand, within PfGW456L13_1704at 1877.740 kb on + strand, within PfGW456L13_1704at 1877.740 kb on + strand, within PfGW456L13_1704at 1877.740 kb on + strand, within PfGW456L13_1704at 1877.741 kb on - strand, within PfGW456L13_1704at 1877.741 kb on - strand, within PfGW456L13_1704at 1877.741 kb on - strand, within PfGW456L13_1704at 1877.763 kb on + strand, within PfGW456L13_1704at 1877.763 kb on + strand, within PfGW456L13_1704at 1877.965 kb on + strandat 1878.002 kb on + strandat 1878.002 kb on + strandat 1878.003 kb on - strandat 1878.069 kb on - strand, within PfGW456L13_1705at 1878.098 kb on + strand, within PfGW456L13_1705at 1878.099 kb on - strand, within PfGW456L13_1705at 1878.197 kb on + strand, within PfGW456L13_1705at 1878.315 kb on + strandat 1878.316 kb on - strandat 1878.316 kb on - strandat 1878.353 kb on + strandat 1878.353 kb on + strandat 1878.354 kb on - strandat 1878.354 kb on - strandat 1878.354 kb on - strandat 1878.376 kb on + strandat 1878.597 kb on - strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.600 kb on + strand, within PfGW456L13_1706at 1878.601 kb on - strand, within PfGW456L13_1706at 1878.601 kb on - strand, within PfGW456L13_1706at 1878.601 kb on - strand, within PfGW456L13_1706at 1878.601 kb on - strand, within PfGW456L13_1706at 1878.601 kb on - strand, within PfGW456L13_1706at 1878.777 kb on - strand, within PfGW456L13_1706at 1878.840 kb on - strand, within PfGW456L13_1706at 1878.840 kb on - strand, within PfGW456L13_1706at 1878.933 kb on + strand, within PfGW456L13_1706at 1878.933 kb on + strand, within PfGW456L13_1706at 1878.933 kb on + strand, within PfGW456L13_1706at 1878.933 kb on + strand, within PfGW456L13_1706at 1878.934 kb on - strand, within PfGW456L13_1706at 1878.934 kb on - strand, within PfGW456L13_1706at 1878.934 kb on - strand, within PfGW456L13_1706at 1878.934 kb on - strand, within PfGW456L13_1706at 1879.215 kb on + strand, within PfGW456L13_1706at 1879.216 kb on - strand, within PfGW456L13_1706at 1879.243 kb on + strand, within PfGW456L13_1706at 1879.243 kb on + strand, within PfGW456L13_1706at 1879.243 kb on + strand, within PfGW456L13_1706at 1879.243 kb on + strand, within PfGW456L13_1706at 1879.244 kb on - strand, within PfGW456L13_1706at 1879.244 kb on - strand, within PfGW456L13_1706at 1879.244 kb on - strand, within PfGW456L13_1706at 1879.244 kb on - strand, within PfGW456L13_1706at 1879.244 kb on - strand, within PfGW456L13_1706at 1879.274 kb on - strandat 1879.274 kb on - strandat 1879.451 kb on - strandat 1879.451 kb on - strandat 1879.451 kb on - strandat 1879.451 kb on - strandat 1879.547 kb on - strand, within PfGW456L13_1707at 1879.547 kb on - strand, within PfGW456L13_1707at 1879.591 kb on + strand, within PfGW456L13_1707at 1879.591 kb on + strand, within PfGW456L13_1707at 1879.591 kb on + strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.592 kb on - strand, within PfGW456L13_1707at 1879.657 kb on + strand, within PfGW456L13_1707at 1879.786 kb on - strandat 1879.786 kb on - strandat 1879.875 kb on + strandat 1879.875 kb on + strandat 1879.876 kb on - strandat 1880.022 kb on + strand, within PfGW456L13_1708at 1880.022 kb on + strand, within PfGW456L13_1708at 1880.022 kb on + strand, within PfGW456L13_1708at 1880.022 kb on + strand, within PfGW456L13_1708at 1880.023 kb on - strand, within PfGW456L13_1708at 1880.023 kb on - strand, within PfGW456L13_1708at 1880.023 kb on - strand, within PfGW456L13_1708at 1880.023 kb on - strand, within PfGW456L13_1708at 1880.023 kb on - strand, within PfGW456L13_1708at 1880.101 kb on + strand, within PfGW456L13_1708at 1880.110 kb on - strand, within PfGW456L13_1708at 1880.110 kb on - strand, within PfGW456L13_1708at 1880.298 kb on + strand, within PfGW456L13_1708at 1880.298 kb on + strand, within PfGW456L13_1708at 1880.299 kb on - strand, within PfGW456L13_1708at 1880.299 kb on - strand, within PfGW456L13_1708

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,877,422 - +0.4
1,877,445 - +0.2
1,877,530 + -0.0
1,877,530 + -0.5
1,877,575 + PfGW456L13_1704 0.17 +1.4
1,877,576 - PfGW456L13_1704 0.17 -0.3
1,877,576 - PfGW456L13_1704 0.17 +0.3
1,877,576 - PfGW456L13_1704 0.17 +0.4
1,877,640 + PfGW456L13_1704 0.31 +0.8
1,877,640 + PfGW456L13_1704 0.31 -0.7
1,877,640 + PfGW456L13_1704 0.31 +0.6
1,877,640 + PfGW456L13_1704 0.31 -0.7
1,877,640 + PfGW456L13_1704 0.31 +2.7
1,877,641 - PfGW456L13_1704 0.31 +1.1
1,877,641 - PfGW456L13_1704 0.31 +1.2
1,877,641 - PfGW456L13_1704 0.31 +1.5
1,877,740 + PfGW456L13_1704 0.52 +0.9
1,877,740 + PfGW456L13_1704 0.52 -2.4
1,877,740 + PfGW456L13_1704 0.52 -0.2
1,877,740 + PfGW456L13_1704 0.52 -0.2
1,877,740 + PfGW456L13_1704 0.52 +0.7
1,877,741 - PfGW456L13_1704 0.52 +0.3
1,877,741 - PfGW456L13_1704 0.52 +0.1
1,877,741 - PfGW456L13_1704 0.52 +0.2
1,877,763 + PfGW456L13_1704 0.57 +0.7
1,877,763 + PfGW456L13_1704 0.57 -0.9
1,877,965 + +0.6
1,878,002 + +0.5
1,878,002 + -1.0
1,878,003 - -1.3
1,878,069 - PfGW456L13_1705 0.20 -0.2
1,878,098 + PfGW456L13_1705 0.29 +1.2
1,878,099 - PfGW456L13_1705 0.29 +0.7
1,878,197 + PfGW456L13_1705 0.60 -2.6
1,878,315 + +0.4
1,878,316 - -0.3
1,878,316 - +0.5
1,878,353 + -1.2
1,878,353 + +0.0
1,878,354 - -1.8
1,878,354 - -0.5
1,878,354 - -2.9
1,878,376 + +0.6
1,878,597 - PfGW456L13_1706 0.20 -0.6
1,878,600 + PfGW456L13_1706 0.20 -0.8
1,878,600 + PfGW456L13_1706 0.20 +0.0
1,878,600 + PfGW456L13_1706 0.20 +0.3
1,878,600 + PfGW456L13_1706 0.20 -0.2
1,878,600 + PfGW456L13_1706 0.20 +0.1
1,878,600 + PfGW456L13_1706 0.20 +0.1
1,878,601 - PfGW456L13_1706 0.20 +0.1
1,878,601 - PfGW456L13_1706 0.20 -0.1
1,878,601 - PfGW456L13_1706 0.20 +1.2
1,878,601 - PfGW456L13_1706 0.20 -1.9
1,878,601 - PfGW456L13_1706 0.20 +0.8
1,878,777 - PfGW456L13_1706 0.39 +0.7
1,878,840 - PfGW456L13_1706 0.46 -0.6
1,878,840 - PfGW456L13_1706 0.46 +0.8
1,878,933 + PfGW456L13_1706 0.55 -0.1
1,878,933 + PfGW456L13_1706 0.55 +0.8
1,878,933 + PfGW456L13_1706 0.55 +0.6
1,878,933 + PfGW456L13_1706 0.55 -0.1
1,878,934 - PfGW456L13_1706 0.56 -0.8
1,878,934 - PfGW456L13_1706 0.56 -2.1
1,878,934 - PfGW456L13_1706 0.56 +0.5
1,878,934 - PfGW456L13_1706 0.56 +0.1
1,879,215 + PfGW456L13_1706 0.86 -0.1
1,879,216 - PfGW456L13_1706 0.86 -0.3
1,879,243 + PfGW456L13_1706 0.89 +0.8
1,879,243 + PfGW456L13_1706 0.89 +0.7
1,879,243 + PfGW456L13_1706 0.89 -0.1
1,879,243 + PfGW456L13_1706 0.89 -0.3
1,879,244 - PfGW456L13_1706 0.89 +1.4
1,879,244 - PfGW456L13_1706 0.89 -0.4
1,879,244 - PfGW456L13_1706 0.89 +1.6
1,879,244 - PfGW456L13_1706 0.89 -0.3
1,879,244 - PfGW456L13_1706 0.89 +0.7
1,879,274 - +0.9
1,879,274 - -0.6
1,879,451 - +0.9
1,879,451 - -0.1
1,879,451 - -0.4
1,879,451 - -0.3
1,879,547 - PfGW456L13_1707 0.28 +0.2
1,879,547 - PfGW456L13_1707 0.28 +0.7
1,879,591 + PfGW456L13_1707 0.40 -0.2
1,879,591 + PfGW456L13_1707 0.40 -0.9
1,879,591 + PfGW456L13_1707 0.40 +0.4
1,879,592 - PfGW456L13_1707 0.41 +0.7
1,879,592 - PfGW456L13_1707 0.41 +0.0
1,879,592 - PfGW456L13_1707 0.41 -0.6
1,879,592 - PfGW456L13_1707 0.41 +1.0
1,879,592 - PfGW456L13_1707 0.41 -0.0
1,879,592 - PfGW456L13_1707 0.41 -2.0
1,879,592 - PfGW456L13_1707 0.41 -0.7
1,879,592 - PfGW456L13_1707 0.41 +0.1
1,879,657 + PfGW456L13_1707 0.59 +2.1
1,879,786 - +0.1
1,879,786 - +0.2
1,879,875 + +0.0
1,879,875 + -0.2
1,879,876 - +0.8
1,880,022 + PfGW456L13_1708 0.22 +0.1
1,880,022 + PfGW456L13_1708 0.22 -0.1
1,880,022 + PfGW456L13_1708 0.22 +1.1
1,880,022 + PfGW456L13_1708 0.22 +0.5
1,880,023 - PfGW456L13_1708 0.22 -2.2
1,880,023 - PfGW456L13_1708 0.22 +0.5
1,880,023 - PfGW456L13_1708 0.22 -0.3
1,880,023 - PfGW456L13_1708 0.22 -0.3
1,880,023 - PfGW456L13_1708 0.22 -0.5
1,880,101 + PfGW456L13_1708 0.30 +0.2
1,880,110 - PfGW456L13_1708 0.31 -1.0
1,880,110 - PfGW456L13_1708 0.31 -1.1
1,880,298 + PfGW456L13_1708 0.50 -0.7
1,880,298 + PfGW456L13_1708 0.50 +0.1
1,880,299 - PfGW456L13_1708 0.50 +0.0
1,880,299 - PfGW456L13_1708 0.50 +0.5

Or see this region's nucleotide sequence