Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1704 and PfGW456L13_1705 are separated by 40 nucleotides PfGW456L13_1705 and PfGW456L13_1706 are separated by 88 nucleotides PfGW456L13_1706 and PfGW456L13_1707 are separated by 99 nucleotides PfGW456L13_1707 and PfGW456L13_1708 overlap by 1 nucleotides
PfGW456L13_1704 - Ketosteroid isomerase-related protein, at 1,877,494 to 1,877,964
_1704
PfGW456L13_1705 - FIG00955494: hypothetical protein, at 1,878,005 to 1,878,325
_1705
PfGW456L13_1706 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 1,878,414 to 1,879,349
_1706
PfGW456L13_1707 - Glutaredoxin NrdH, at 1,879,449 to 1,879,799
_1707
PfGW456L13_1708 - Nucleoid-associated protein, at 1,879,799 to 1,880,803
_1708
Position (kb)
1878
1879
1880 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1877.422 kb on - strand at 1877.445 kb on - strand at 1877.530 kb on + strand at 1877.530 kb on + strand at 1877.575 kb on + strand, within PfGW456L13_1704 at 1877.576 kb on - strand, within PfGW456L13_1704 at 1877.576 kb on - strand, within PfGW456L13_1704 at 1877.576 kb on - strand, within PfGW456L13_1704 at 1877.640 kb on + strand, within PfGW456L13_1704 at 1877.640 kb on + strand, within PfGW456L13_1704 at 1877.640 kb on + strand, within PfGW456L13_1704 at 1877.640 kb on + strand, within PfGW456L13_1704 at 1877.640 kb on + strand, within PfGW456L13_1704 at 1877.641 kb on - strand, within PfGW456L13_1704 at 1877.641 kb on - strand, within PfGW456L13_1704 at 1877.641 kb on - strand, within PfGW456L13_1704 at 1877.740 kb on + strand, within PfGW456L13_1704 at 1877.740 kb on + strand, within PfGW456L13_1704 at 1877.740 kb on + strand, within PfGW456L13_1704 at 1877.740 kb on + strand, within PfGW456L13_1704 at 1877.740 kb on + strand, within PfGW456L13_1704 at 1877.741 kb on - strand, within PfGW456L13_1704 at 1877.741 kb on - strand, within PfGW456L13_1704 at 1877.741 kb on - strand, within PfGW456L13_1704 at 1877.763 kb on + strand, within PfGW456L13_1704 at 1877.763 kb on + strand, within PfGW456L13_1704 at 1877.965 kb on + strand at 1878.002 kb on + strand at 1878.002 kb on + strand at 1878.003 kb on - strand at 1878.069 kb on - strand, within PfGW456L13_1705 at 1878.098 kb on + strand, within PfGW456L13_1705 at 1878.099 kb on - strand, within PfGW456L13_1705 at 1878.197 kb on + strand, within PfGW456L13_1705 at 1878.315 kb on + strand at 1878.316 kb on - strand at 1878.316 kb on - strand at 1878.353 kb on + strand at 1878.353 kb on + strand at 1878.354 kb on - strand at 1878.354 kb on - strand at 1878.354 kb on - strand at 1878.376 kb on + strand at 1878.597 kb on - strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.600 kb on + strand, within PfGW456L13_1706 at 1878.601 kb on - strand, within PfGW456L13_1706 at 1878.601 kb on - strand, within PfGW456L13_1706 at 1878.601 kb on - strand, within PfGW456L13_1706 at 1878.601 kb on - strand, within PfGW456L13_1706 at 1878.601 kb on - strand, within PfGW456L13_1706 at 1878.777 kb on - strand, within PfGW456L13_1706 at 1878.840 kb on - strand, within PfGW456L13_1706 at 1878.840 kb on - strand, within PfGW456L13_1706 at 1878.933 kb on + strand, within PfGW456L13_1706 at 1878.933 kb on + strand, within PfGW456L13_1706 at 1878.933 kb on + strand, within PfGW456L13_1706 at 1878.933 kb on + strand, within PfGW456L13_1706 at 1878.934 kb on - strand, within PfGW456L13_1706 at 1878.934 kb on - strand, within PfGW456L13_1706 at 1878.934 kb on - strand, within PfGW456L13_1706 at 1878.934 kb on - strand, within PfGW456L13_1706 at 1879.215 kb on + strand, within PfGW456L13_1706 at 1879.216 kb on - strand, within PfGW456L13_1706 at 1879.243 kb on + strand, within PfGW456L13_1706 at 1879.243 kb on + strand, within PfGW456L13_1706 at 1879.243 kb on + strand, within PfGW456L13_1706 at 1879.243 kb on + strand, within PfGW456L13_1706 at 1879.244 kb on - strand, within PfGW456L13_1706 at 1879.244 kb on - strand, within PfGW456L13_1706 at 1879.244 kb on - strand, within PfGW456L13_1706 at 1879.244 kb on - strand, within PfGW456L13_1706 at 1879.244 kb on - strand, within PfGW456L13_1706 at 1879.274 kb on - strand at 1879.274 kb on - strand at 1879.451 kb on - strand at 1879.451 kb on - strand at 1879.451 kb on - strand at 1879.451 kb on - strand at 1879.547 kb on - strand, within PfGW456L13_1707 at 1879.547 kb on - strand, within PfGW456L13_1707 at 1879.591 kb on + strand, within PfGW456L13_1707 at 1879.591 kb on + strand, within PfGW456L13_1707 at 1879.591 kb on + strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.592 kb on - strand, within PfGW456L13_1707 at 1879.657 kb on + strand, within PfGW456L13_1707 at 1879.786 kb on - strand at 1879.786 kb on - strand at 1879.875 kb on + strand at 1879.875 kb on + strand at 1879.876 kb on - strand at 1880.022 kb on + strand, within PfGW456L13_1708 at 1880.022 kb on + strand, within PfGW456L13_1708 at 1880.022 kb on + strand, within PfGW456L13_1708 at 1880.022 kb on + strand, within PfGW456L13_1708 at 1880.023 kb on - strand, within PfGW456L13_1708 at 1880.023 kb on - strand, within PfGW456L13_1708 at 1880.023 kb on - strand, within PfGW456L13_1708 at 1880.023 kb on - strand, within PfGW456L13_1708 at 1880.023 kb on - strand, within PfGW456L13_1708 at 1880.101 kb on + strand, within PfGW456L13_1708 at 1880.110 kb on - strand, within PfGW456L13_1708 at 1880.110 kb on - strand, within PfGW456L13_1708 at 1880.298 kb on + strand, within PfGW456L13_1708 at 1880.298 kb on + strand, within PfGW456L13_1708 at 1880.299 kb on - strand, within PfGW456L13_1708 at 1880.299 kb on - strand, within PfGW456L13_1708
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,877,422 - +0.4 1,877,445 - +0.2 1,877,530 + -0.0 1,877,530 + -0.5 1,877,575 + PfGW456L13_1704 0.17 +1.4 1,877,576 - PfGW456L13_1704 0.17 -0.3 1,877,576 - PfGW456L13_1704 0.17 +0.3 1,877,576 - PfGW456L13_1704 0.17 +0.4 1,877,640 + PfGW456L13_1704 0.31 +0.8 1,877,640 + PfGW456L13_1704 0.31 -0.7 1,877,640 + PfGW456L13_1704 0.31 +0.6 1,877,640 + PfGW456L13_1704 0.31 -0.7 1,877,640 + PfGW456L13_1704 0.31 +2.7 1,877,641 - PfGW456L13_1704 0.31 +1.1 1,877,641 - PfGW456L13_1704 0.31 +1.2 1,877,641 - PfGW456L13_1704 0.31 +1.5 1,877,740 + PfGW456L13_1704 0.52 +0.9 1,877,740 + PfGW456L13_1704 0.52 -2.4 1,877,740 + PfGW456L13_1704 0.52 -0.2 1,877,740 + PfGW456L13_1704 0.52 -0.2 1,877,740 + PfGW456L13_1704 0.52 +0.7 1,877,741 - PfGW456L13_1704 0.52 +0.3 1,877,741 - PfGW456L13_1704 0.52 +0.1 1,877,741 - PfGW456L13_1704 0.52 +0.2 1,877,763 + PfGW456L13_1704 0.57 +0.7 1,877,763 + PfGW456L13_1704 0.57 -0.9 1,877,965 + +0.6 1,878,002 + +0.5 1,878,002 + -1.0 1,878,003 - -1.3 1,878,069 - PfGW456L13_1705 0.20 -0.2 1,878,098 + PfGW456L13_1705 0.29 +1.2 1,878,099 - PfGW456L13_1705 0.29 +0.7 1,878,197 + PfGW456L13_1705 0.60 -2.6 1,878,315 + +0.4 1,878,316 - -0.3 1,878,316 - +0.5 1,878,353 + -1.2 1,878,353 + +0.0 1,878,354 - -1.8 1,878,354 - -0.5 1,878,354 - -2.9 1,878,376 + +0.6 1,878,597 - PfGW456L13_1706 0.20 -0.6 1,878,600 + PfGW456L13_1706 0.20 -0.8 1,878,600 + PfGW456L13_1706 0.20 +0.0 1,878,600 + PfGW456L13_1706 0.20 +0.3 1,878,600 + PfGW456L13_1706 0.20 -0.2 1,878,600 + PfGW456L13_1706 0.20 +0.1 1,878,600 + PfGW456L13_1706 0.20 +0.1 1,878,601 - PfGW456L13_1706 0.20 +0.1 1,878,601 - PfGW456L13_1706 0.20 -0.1 1,878,601 - PfGW456L13_1706 0.20 +1.2 1,878,601 - PfGW456L13_1706 0.20 -1.9 1,878,601 - PfGW456L13_1706 0.20 +0.8 1,878,777 - PfGW456L13_1706 0.39 +0.7 1,878,840 - PfGW456L13_1706 0.46 -0.6 1,878,840 - PfGW456L13_1706 0.46 +0.8 1,878,933 + PfGW456L13_1706 0.55 -0.1 1,878,933 + PfGW456L13_1706 0.55 +0.8 1,878,933 + PfGW456L13_1706 0.55 +0.6 1,878,933 + PfGW456L13_1706 0.55 -0.1 1,878,934 - PfGW456L13_1706 0.56 -0.8 1,878,934 - PfGW456L13_1706 0.56 -2.1 1,878,934 - PfGW456L13_1706 0.56 +0.5 1,878,934 - PfGW456L13_1706 0.56 +0.1 1,879,215 + PfGW456L13_1706 0.86 -0.1 1,879,216 - PfGW456L13_1706 0.86 -0.3 1,879,243 + PfGW456L13_1706 0.89 +0.8 1,879,243 + PfGW456L13_1706 0.89 +0.7 1,879,243 + PfGW456L13_1706 0.89 -0.1 1,879,243 + PfGW456L13_1706 0.89 -0.3 1,879,244 - PfGW456L13_1706 0.89 +1.4 1,879,244 - PfGW456L13_1706 0.89 -0.4 1,879,244 - PfGW456L13_1706 0.89 +1.6 1,879,244 - PfGW456L13_1706 0.89 -0.3 1,879,244 - PfGW456L13_1706 0.89 +0.7 1,879,274 - +0.9 1,879,274 - -0.6 1,879,451 - +0.9 1,879,451 - -0.1 1,879,451 - -0.4 1,879,451 - -0.3 1,879,547 - PfGW456L13_1707 0.28 +0.2 1,879,547 - PfGW456L13_1707 0.28 +0.7 1,879,591 + PfGW456L13_1707 0.40 -0.2 1,879,591 + PfGW456L13_1707 0.40 -0.9 1,879,591 + PfGW456L13_1707 0.40 +0.4 1,879,592 - PfGW456L13_1707 0.41 +0.7 1,879,592 - PfGW456L13_1707 0.41 +0.0 1,879,592 - PfGW456L13_1707 0.41 -0.6 1,879,592 - PfGW456L13_1707 0.41 +1.0 1,879,592 - PfGW456L13_1707 0.41 -0.0 1,879,592 - PfGW456L13_1707 0.41 -2.0 1,879,592 - PfGW456L13_1707 0.41 -0.7 1,879,592 - PfGW456L13_1707 0.41 +0.1 1,879,657 + PfGW456L13_1707 0.59 +2.1 1,879,786 - +0.1 1,879,786 - +0.2 1,879,875 + +0.0 1,879,875 + -0.2 1,879,876 - +0.8 1,880,022 + PfGW456L13_1708 0.22 +0.1 1,880,022 + PfGW456L13_1708 0.22 -0.1 1,880,022 + PfGW456L13_1708 0.22 +1.1 1,880,022 + PfGW456L13_1708 0.22 +0.5 1,880,023 - PfGW456L13_1708 0.22 -2.2 1,880,023 - PfGW456L13_1708 0.22 +0.5 1,880,023 - PfGW456L13_1708 0.22 -0.3 1,880,023 - PfGW456L13_1708 0.22 -0.3 1,880,023 - PfGW456L13_1708 0.22 -0.5 1,880,101 + PfGW456L13_1708 0.30 +0.2 1,880,110 - PfGW456L13_1708 0.31 -1.0 1,880,110 - PfGW456L13_1708 0.31 -1.1 1,880,298 + PfGW456L13_1708 0.50 -0.7 1,880,298 + PfGW456L13_1708 0.50 +0.1 1,880,299 - PfGW456L13_1708 0.50 +0.0 1,880,299 - PfGW456L13_1708 0.50 +0.5
Or see this region's nucleotide sequence