Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1361

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1360 and PfGW456L13_1361 overlap by 8 nucleotidesPfGW456L13_1361 and PfGW456L13_1362 are separated by 17 nucleotides PfGW456L13_1360 - Penicillin-binding protein 2 (PBP-2), at 1,503,710 to 1,505,605 _1360 PfGW456L13_1361 - Rod shape-determining protein RodA, at 1,505,598 to 1,506,740 _1361 PfGW456L13_1362 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 1,506,758 to 1,507,768 _1362 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2at 1505.561 kb on + strandat 1505.572 kb on + strandat 1505.572 kb on + strandat 1505.603 kb on + strandat 1505.603 kb on + strandat 1506.742 kb on + strandat 1506.743 kb on - strandat 1506.743 kb on - strandat 1506.743 kb on - strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.765 kb on + strandat 1506.766 kb on - strandat 1506.766 kb on - strandat 1506.766 kb on - strandat 1506.766 kb on - strandat 1506.810 kb on + strandat 1506.811 kb on - strandat 1506.811 kb on - strandat 1506.851 kb on + strandat 1507.045 kb on - strand, within PfGW456L13_1362at 1507.106 kb on + strand, within PfGW456L13_1362at 1507.106 kb on + strand, within PfGW456L13_1362at 1507.165 kb on + strand, within PfGW456L13_1362at 1507.166 kb on - strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.314 kb on - strand, within PfGW456L13_1362at 1507.364 kb on + strand, within PfGW456L13_1362at 1507.365 kb on - strand, within PfGW456L13_1362at 1507.394 kb on - strand, within PfGW456L13_1362at 1507.443 kb on - strand, within PfGW456L13_1362at 1507.443 kb on - strand, within PfGW456L13_1362at 1507.479 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.693 kb on + strandat 1507.693 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,505,561 + -1.0
1,505,572 + -2.7
1,505,572 + -0.1
1,505,603 + +1.9
1,505,603 + -1.0
1,506,742 + +0.0
1,506,743 - +0.9
1,506,743 - -1.9
1,506,743 - +0.4
1,506,765 + -0.5
1,506,765 + -0.0
1,506,765 + -0.2
1,506,765 + +0.5
1,506,765 + -0.2
1,506,765 + -0.3
1,506,765 + -0.2
1,506,765 + +0.2
1,506,765 + -1.1
1,506,765 + -0.9
1,506,766 - -0.5
1,506,766 - +0.0
1,506,766 - -0.1
1,506,766 - +1.4
1,506,810 + +0.3
1,506,811 - -0.3
1,506,811 - +0.2
1,506,851 + -1.9
1,507,045 - PfGW456L13_1362 0.28 -2.4
1,507,106 + PfGW456L13_1362 0.34 -1.9
1,507,106 + PfGW456L13_1362 0.34 -0.1
1,507,165 + PfGW456L13_1362 0.40 -0.2
1,507,166 - PfGW456L13_1362 0.40 +0.3
1,507,313 + PfGW456L13_1362 0.55 -1.1
1,507,313 + PfGW456L13_1362 0.55 -0.2
1,507,313 + PfGW456L13_1362 0.55 -1.7
1,507,313 + PfGW456L13_1362 0.55 +0.7
1,507,313 + PfGW456L13_1362 0.55 +0.1
1,507,314 - PfGW456L13_1362 0.55 -1.1
1,507,364 + PfGW456L13_1362 0.60 +0.5
1,507,365 - PfGW456L13_1362 0.60 -0.6
1,507,394 - PfGW456L13_1362 0.63 -0.1
1,507,443 - PfGW456L13_1362 0.68 +0.9
1,507,443 - PfGW456L13_1362 0.68 -1.1
1,507,479 + PfGW456L13_1362 0.71 -0.4
1,507,606 + PfGW456L13_1362 0.84 -0.0
1,507,606 + PfGW456L13_1362 0.84 -0.5
1,507,606 + PfGW456L13_1362 0.84 +1.0
1,507,606 + PfGW456L13_1362 0.84 -0.5
1,507,606 + PfGW456L13_1362 0.84 -0.5
1,507,606 + PfGW456L13_1362 0.84 +1.0
1,507,606 + PfGW456L13_1362 0.84 -0.5
1,507,606 + PfGW456L13_1362 0.84 -0.7
1,507,693 + +0.3
1,507,693 + +0.0
1,507,709 + +0.0
1,507,709 + -0.5
1,507,709 + -0.5
1,507,709 + -0.3
1,507,709 + +0.3
1,507,709 + +0.6
1,507,709 + +0.6
1,507,709 + +0.1
1,507,709 + +0.2
1,507,709 + -0.1
1,507,709 + -0.8
1,507,709 + -0.1
1,507,722 + -1.0
1,507,722 + +0.7
1,507,722 + -0.3
1,507,722 + +0.7
1,507,722 + -0.7

Or see this region's nucleotide sequence