Strain Fitness in Pseudomonas sp. RS175 around PFR28_01407

Experiment: Ferulic Acid (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01406 and PFR28_01407 overlap by 12 nucleotidesPFR28_01407 and PFR28_01408 are separated by 330 nucleotidesPFR28_01408 and PFR28_01409 are separated by 173 nucleotides PFR28_01406: PFR28_01406 - hypothetical protein, at 1,533,478 to 1,534,572 _01406 PFR28_01407: PFR28_01407 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive, at 1,534,561 to 1,535,631 _01407 PFR28_01408: PFR28_01408 - hypothetical protein, at 1,535,962 to 1,536,090 _01408 PFR28_01409: PFR28_01409 - hypothetical protein, at 1,536,264 to 1,536,698 _01409 Position (kb) 1534 1535 1536Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1533.756 kb on + strand, within PFR28_01406at 1533.756 kb on + strand, within PFR28_01406at 1533.756 kb on + strand, within PFR28_01406at 1533.757 kb on - strand, within PFR28_01406at 1533.757 kb on - strand, within PFR28_01406at 1533.940 kb on - strand, within PFR28_01406at 1533.940 kb on - strand, within PFR28_01406at 1533.940 kb on - strand, within PFR28_01406at 1533.940 kb on - strand, within PFR28_01406at 1533.940 kb on - strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.132 kb on + strand, within PFR28_01406at 1534.133 kb on - strand, within PFR28_01406at 1534.133 kb on - strand, within PFR28_01406at 1534.133 kb on - strand, within PFR28_01406at 1534.133 kb on - strand, within PFR28_01406at 1534.260 kb on + strand, within PFR28_01406at 1534.260 kb on + strand, within PFR28_01406at 1534.260 kb on + strand, within PFR28_01406at 1534.261 kb on - strand, within PFR28_01406at 1534.261 kb on - strand, within PFR28_01406at 1534.261 kb on - strand, within PFR28_01406at 1534.283 kb on + strand, within PFR28_01406at 1534.284 kb on - strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.345 kb on + strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.346 kb on - strand, within PFR28_01406at 1534.409 kb on + strand, within PFR28_01406at 1535.059 kb on + strand, within PFR28_01407at 1535.060 kb on - strand, within PFR28_01407at 1535.068 kb on - strand, within PFR28_01407at 1535.068 kb on - strand, within PFR28_01407at 1535.153 kb on + strand, within PFR28_01407at 1535.154 kb on - strand, within PFR28_01407at 1535.154 kb on - strand, within PFR28_01407at 1535.154 kb on - strand, within PFR28_01407at 1535.283 kb on - strand, within PFR28_01407at 1535.327 kb on + strand, within PFR28_01407at 1535.338 kb on + strand, within PFR28_01407at 1535.339 kb on - strand, within PFR28_01407at 1535.360 kb on - strand, within PFR28_01407at 1535.360 kb on - strand, within PFR28_01407at 1535.360 kb on - strand, within PFR28_01407at 1535.394 kb on - strand, within PFR28_01407at 1535.634 kb on + strandat 1535.634 kb on + strandat 1535.635 kb on - strandat 1535.635 kb on - strandat 1535.635 kb on - strandat 1535.680 kb on + strandat 1535.681 kb on - strandat 1535.681 kb on - strandat 1535.807 kb on - strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.815 kb on + strandat 1535.816 kb on - strandat 1535.816 kb on - strandat 1535.816 kb on - strandat 1535.816 kb on - strandat 1535.816 kb on - strandat 1535.816 kb on - strandat 1535.824 kb on + strandat 1535.824 kb on + strandat 1535.824 kb on + strandat 1535.825 kb on - strandat 1535.825 kb on - strandat 1535.825 kb on - strandat 1535.960 kb on + strandat 1535.996 kb on + strand, within PFR28_01408at 1535.996 kb on + strand, within PFR28_01408at 1535.997 kb on - strand, within PFR28_01408at 1536.025 kb on + strand, within PFR28_01408at 1536.120 kb on + strandat 1536.120 kb on + strandat 1536.120 kb on + strandat 1536.121 kb on - strandat 1536.121 kb on - strandat 1536.121 kb on - strandat 1536.121 kb on - strandat 1536.123 kb on + strandat 1536.123 kb on + strandat 1536.124 kb on - strandat 1536.124 kb on - strandat 1536.146 kb on + strandat 1536.147 kb on - strandat 1536.151 kb on + strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.342 kb on + strand, within PFR28_01409at 1536.342 kb on + strand, within PFR28_01409at 1536.342 kb on + strand, within PFR28_01409at 1536.343 kb on - strand, within PFR28_01409at 1536.343 kb on - strand, within PFR28_01409at 1536.343 kb on - strand, within PFR28_01409at 1536.345 kb on + strand, within PFR28_01409at 1536.345 kb on + strand, within PFR28_01409at 1536.345 kb on + strand, within PFR28_01409at 1536.345 kb on + strand, within PFR28_01409at 1536.345 kb on + strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.346 kb on - strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.477 kb on + strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.478 kb on - strand, within PFR28_01409at 1536.496 kb on + strand, within PFR28_01409at 1536.496 kb on + strand, within PFR28_01409at 1536.496 kb on + strand, within PFR28_01409at 1536.497 kb on - strand, within PFR28_01409at 1536.497 kb on - strand, within PFR28_01409at 1536.497 kb on - strand, within PFR28_01409at 1536.497 kb on - strand, within PFR28_01409

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM
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1,533,756 + PFR28_01406 0.25 +0.7
1,533,756 + PFR28_01406 0.25 -0.2
1,533,756 + PFR28_01406 0.25 -1.8
1,533,757 - PFR28_01406 0.25 +0.9
1,533,757 - PFR28_01406 0.25 +0.6
1,533,940 - PFR28_01406 0.42 +0.5
1,533,940 - PFR28_01406 0.42 +0.3
1,533,940 - PFR28_01406 0.42 -0.4
1,533,940 - PFR28_01406 0.42 -0.9
1,533,940 - PFR28_01406 0.42 -0.7
1,534,132 + PFR28_01406 0.60 -1.1
1,534,132 + PFR28_01406 0.60 -0.2
1,534,132 + PFR28_01406 0.60 +0.4
1,534,132 + PFR28_01406 0.60 -0.7
1,534,132 + PFR28_01406 0.60 -0.1
1,534,132 + PFR28_01406 0.60 +1.2
1,534,132 + PFR28_01406 0.60 -0.2
1,534,133 - PFR28_01406 0.60 +0.4
1,534,133 - PFR28_01406 0.60 +0.8
1,534,133 - PFR28_01406 0.60 -0.6
1,534,133 - PFR28_01406 0.60 +0.9
1,534,260 + PFR28_01406 0.71 -0.2
1,534,260 + PFR28_01406 0.71 -1.6
1,534,260 + PFR28_01406 0.71 -1.4
1,534,261 - PFR28_01406 0.72 -0.1
1,534,261 - PFR28_01406 0.72 -0.2
1,534,261 - PFR28_01406 0.72 -0.4
1,534,283 + PFR28_01406 0.74 -0.4
1,534,284 - PFR28_01406 0.74 -0.1
1,534,345 + PFR28_01406 0.79 +0.3
1,534,345 + PFR28_01406 0.79 -1.1
1,534,345 + PFR28_01406 0.79 -0.3
1,534,345 + PFR28_01406 0.79 -0.3
1,534,345 + PFR28_01406 0.79 +1.3
1,534,345 + PFR28_01406 0.79 +0.5
1,534,345 + PFR28_01406 0.79 +0.0
1,534,345 + PFR28_01406 0.79 -1.6
1,534,345 + PFR28_01406 0.79 -1.2
1,534,345 + PFR28_01406 0.79 +0.7
1,534,346 - PFR28_01406 0.79 -0.6
1,534,346 - PFR28_01406 0.79 +0.4
1,534,346 - PFR28_01406 0.79 -1.6
1,534,346 - PFR28_01406 0.79 -0.5
1,534,346 - PFR28_01406 0.79 +0.6
1,534,346 - PFR28_01406 0.79 -0.3
1,534,409 + PFR28_01406 0.85 -1.8
1,535,059 + PFR28_01407 0.46 +0.0
1,535,060 - PFR28_01407 0.47 +0.3
1,535,068 - PFR28_01407 0.47 -0.1
1,535,068 - PFR28_01407 0.47 -0.1
1,535,153 + PFR28_01407 0.55 +1.9
1,535,154 - PFR28_01407 0.55 -0.0
1,535,154 - PFR28_01407 0.55 -0.9
1,535,154 - PFR28_01407 0.55 +0.6
1,535,283 - PFR28_01407 0.67 +0.2
1,535,327 + PFR28_01407 0.72 +0.1
1,535,338 + PFR28_01407 0.73 -0.4
1,535,339 - PFR28_01407 0.73 -0.2
1,535,360 - PFR28_01407 0.75 +0.5
1,535,360 - PFR28_01407 0.75 -0.3
1,535,360 - PFR28_01407 0.75 +0.2
1,535,394 - PFR28_01407 0.78 -0.1
1,535,634 + -0.4
1,535,634 + +0.1
1,535,635 - +0.5
1,535,635 - -1.3
1,535,635 - +1.5
1,535,680 + -0.1
1,535,681 - +0.5
1,535,681 - +2.2
1,535,807 - +1.2
1,535,815 + +0.3
1,535,815 + +0.0
1,535,815 + +2.8
1,535,815 + +0.0
1,535,815 + -0.3
1,535,815 + +1.5
1,535,815 + -1.1
1,535,815 + +0.2
1,535,816 - +0.6
1,535,816 - +2.8
1,535,816 - +0.9
1,535,816 - -0.3
1,535,816 - +0.6
1,535,816 - +0.1
1,535,824 + -0.8
1,535,824 + +0.1
1,535,824 + -0.7
1,535,825 - +1.6
1,535,825 - +1.3
1,535,825 - -0.4
1,535,960 + +0.3
1,535,996 + PFR28_01408 0.26 -0.8
1,535,996 + PFR28_01408 0.26 -1.2
1,535,997 - PFR28_01408 0.27 +0.2
1,536,025 + PFR28_01408 0.49 -0.1
1,536,120 + -0.1
1,536,120 + -0.9
1,536,120 + -0.4
1,536,121 - +0.1
1,536,121 - +1.3
1,536,121 - +0.6
1,536,121 - -0.2
1,536,123 + +0.4
1,536,123 + -1.1
1,536,124 - +0.0
1,536,124 - -0.2
1,536,146 + -0.4
1,536,147 - +1.3
1,536,151 + +1.3
1,536,152 - +1.8
1,536,152 - -1.1
1,536,152 - -1.3
1,536,152 - +0.1
1,536,152 - +0.2
1,536,152 - -0.1
1,536,152 - +0.0
1,536,342 + PFR28_01409 0.18 +0.2
1,536,342 + PFR28_01409 0.18 +0.2
1,536,342 + PFR28_01409 0.18 +0.2
1,536,343 - PFR28_01409 0.18 -0.2
1,536,343 - PFR28_01409 0.18 +0.8
1,536,343 - PFR28_01409 0.18 +0.9
1,536,345 + PFR28_01409 0.19 -0.1
1,536,345 + PFR28_01409 0.19 +0.4
1,536,345 + PFR28_01409 0.19 +0.1
1,536,345 + PFR28_01409 0.19 +1.1
1,536,345 + PFR28_01409 0.19 -1.9
1,536,346 - PFR28_01409 0.19 +0.6
1,536,346 - PFR28_01409 0.19 +0.9
1,536,346 - PFR28_01409 0.19 +0.9
1,536,346 - PFR28_01409 0.19 +0.6
1,536,346 - PFR28_01409 0.19 +1.8
1,536,346 - PFR28_01409 0.19 -0.5
1,536,346 - PFR28_01409 0.19 -0.2
1,536,477 + PFR28_01409 0.49 -0.1
1,536,477 + PFR28_01409 0.49 -0.1
1,536,477 + PFR28_01409 0.49 -0.3
1,536,477 + PFR28_01409 0.49 +0.3
1,536,477 + PFR28_01409 0.49 -0.1
1,536,477 + PFR28_01409 0.49 +0.1
1,536,478 - PFR28_01409 0.49 -0.1
1,536,478 - PFR28_01409 0.49 +0.3
1,536,478 - PFR28_01409 0.49 -0.5
1,536,478 - PFR28_01409 0.49 +0.7
1,536,478 - PFR28_01409 0.49 -0.2
1,536,478 - PFR28_01409 0.49 +0.5
1,536,478 - PFR28_01409 0.49 -0.7
1,536,496 + PFR28_01409 0.53 -0.9
1,536,496 + PFR28_01409 0.53 +0.4
1,536,496 + PFR28_01409 0.53 +1.7
1,536,497 - PFR28_01409 0.54 -0.3
1,536,497 - PFR28_01409 0.54 -0.7
1,536,497 - PFR28_01409 0.54 +0.4
1,536,497 - PFR28_01409 0.54 +0.5

Or see this region's nucleotide sequence