Experiment: Ferulic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00149 and PFR28_00150 overlap by 23 nucleotides PFR28_00150 and PFR28_00151 are separated by 5 nucleotides PFR28_00151 and PFR28_00152 are separated by 10 nucleotides
PFR28_00149: PFR28_00149 - hypothetical protein, at 173,438 to 174,571
_00149
PFR28_00150: PFR28_00150 - Endolytic peptidoglycan transglycosylase RlpA, at 174,549 to 175,070
_00150
PFR28_00151: PFR28_00151 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 175,076 to 176,521
_00151
PFR28_00152: PFR28_00152 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 176,532 to 177,983
_00152
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.096 kb on + strand, within PFR28_00149 at 174.096 kb on + strand, within PFR28_00149 at 174.096 kb on + strand, within PFR28_00149 at 174.096 kb on + strand, within PFR28_00149 at 174.097 kb on - strand, within PFR28_00149 at 174.547 kb on + strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.627 kb on + strand, within PFR28_00150 at 174.627 kb on + strand, within PFR28_00150 at 174.652 kb on + strand, within PFR28_00150 at 174.814 kb on + strand, within PFR28_00150 at 174.815 kb on - strand, within PFR28_00150 at 174.817 kb on + strand, within PFR28_00150 at 174.817 kb on + strand, within PFR28_00150 at 174.817 kb on + strand, within PFR28_00150 at 174.818 kb on - strand, within PFR28_00150 at 174.818 kb on - strand, within PFR28_00150 at 174.818 kb on - strand, within PFR28_00150 at 174.928 kb on + strand, within PFR28_00150 at 174.928 kb on + strand, within PFR28_00150 at 174.928 kb on + strand, within PFR28_00150 at 174.928 kb on + strand, within PFR28_00150 at 174.929 kb on - strand, within PFR28_00150 at 174.929 kb on - strand, within PFR28_00150
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM remove 174,096 + PFR28_00149 0.58 +0.6 174,096 + PFR28_00149 0.58 -0.1 174,096 + PFR28_00149 0.58 +0.8 174,096 + PFR28_00149 0.58 -1.1 174,097 - PFR28_00149 0.58 -0.4 174,547 + -0.8 174,548 - -0.3 174,548 - +0.2 174,627 + PFR28_00150 0.15 -0.1 174,627 + PFR28_00150 0.15 +0.4 174,652 + PFR28_00150 0.20 +0.7 174,814 + PFR28_00150 0.51 +0.6 174,815 - PFR28_00150 0.51 +0.0 174,817 + PFR28_00150 0.51 -0.7 174,817 + PFR28_00150 0.51 -1.8 174,817 + PFR28_00150 0.51 +1.2 174,818 - PFR28_00150 0.52 +0.4 174,818 - PFR28_00150 0.52 -0.0 174,818 - PFR28_00150 0.52 +0.4 174,928 + PFR28_00150 0.73 +0.1 174,928 + PFR28_00150 0.73 +1.2 174,928 + PFR28_00150 0.73 -0.3 174,928 + PFR28_00150 0.73 +0.3 174,929 - PFR28_00150 0.73 +0.5 174,929 - PFR28_00150 0.73 -0.5
Or see this region's nucleotide sequence