Experiment: Ferulic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00146 and PFR28_00147 are separated by 85 nucleotides PFR28_00147 and PFR28_00148 are separated by 170 nucleotides PFR28_00148 and PFR28_00149 overlap by 4 nucleotides
PFR28_00146: PFR28_00146 - hypothetical protein, at 170,904 to 171,845
_00146
PFR28_00147: PFR28_00147 - hypothetical protein, at 171,931 to 172,890
_00147
PFR28_00148: PFR28_00148 - hypothetical protein, at 173,061 to 173,441
_00148
PFR28_00149: PFR28_00149 - hypothetical protein, at 173,438 to 174,571
_00149
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 171.117 kb on + strand, within PFR28_00146 at 171.117 kb on + strand, within PFR28_00146 at 171.117 kb on + strand, within PFR28_00146 at 171.201 kb on + strand, within PFR28_00146 at 171.201 kb on + strand, within PFR28_00146 at 171.201 kb on + strand, within PFR28_00146 at 171.202 kb on - strand, within PFR28_00146 at 171.202 kb on - strand, within PFR28_00146 at 171.202 kb on - strand, within PFR28_00146 at 171.202 kb on - strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.264 kb on + strand, within PFR28_00146 at 171.265 kb on - strand, within PFR28_00146 at 171.265 kb on - strand, within PFR28_00146 at 171.265 kb on - strand, within PFR28_00146 at 171.265 kb on - strand, within PFR28_00146 at 171.321 kb on + strand, within PFR28_00146 at 171.321 kb on + strand, within PFR28_00146 at 171.321 kb on + strand, within PFR28_00146 at 171.322 kb on - strand, within PFR28_00146 at 171.322 kb on - strand, within PFR28_00146 at 171.322 kb on - strand, within PFR28_00146 at 171.322 kb on - strand, within PFR28_00146 at 171.322 kb on - strand, within PFR28_00146 at 171.355 kb on - strand, within PFR28_00146 at 171.355 kb on - strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.495 kb on + strand, within PFR28_00146 at 171.496 kb on - strand, within PFR28_00146 at 171.496 kb on - strand, within PFR28_00146 at 171.496 kb on - strand, within PFR28_00146 at 171.616 kb on + strand, within PFR28_00146 at 171.688 kb on - strand, within PFR28_00146 at 171.688 kb on - strand, within PFR28_00146 at 171.688 kb on - strand, within PFR28_00146 at 171.688 kb on - strand, within PFR28_00146 at 171.688 kb on - strand, within PFR28_00146 at 171.798 kb on - strand at 171.843 kb on + strand at 171.844 kb on - strand at 171.905 kb on - strand at 171.905 kb on - strand at 171.928 kb on + strand at 171.928 kb on + strand at 171.928 kb on + strand at 171.928 kb on + strand at 171.928 kb on + strand at 171.928 kb on + strand at 171.929 kb on - strand at 171.929 kb on - strand at 171.929 kb on - strand at 171.929 kb on - strand at 171.929 kb on - strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.930 kb on + strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.931 kb on - strand at 171.964 kb on + strand at 171.965 kb on - strand at 171.986 kb on + strand at 172.033 kb on + strand, within PFR28_00147 at 172.111 kb on + strand, within PFR28_00147 at 172.111 kb on + strand, within PFR28_00147 at 172.111 kb on + strand, within PFR28_00147 at 172.168 kb on + strand, within PFR28_00147 at 172.168 kb on + strand, within PFR28_00147 at 172.168 kb on + strand, within PFR28_00147 at 172.168 kb on + strand, within PFR28_00147 at 172.169 kb on - strand, within PFR28_00147 at 172.169 kb on - strand, within PFR28_00147 at 172.245 kb on - strand, within PFR28_00147 at 172.291 kb on + strand, within PFR28_00147 at 172.291 kb on + strand, within PFR28_00147 at 172.291 kb on + strand, within PFR28_00147 at 172.291 kb on + strand, within PFR28_00147 at 172.292 kb on - strand, within PFR28_00147 at 172.292 kb on - strand, within PFR28_00147 at 172.292 kb on - strand, within PFR28_00147 at 172.292 kb on - strand, within PFR28_00147 at 172.345 kb on + strand, within PFR28_00147 at 172.345 kb on + strand, within PFR28_00147 at 172.360 kb on + strand, within PFR28_00147 at 172.396 kb on + strand, within PFR28_00147 at 172.396 kb on + strand, within PFR28_00147 at 172.396 kb on + strand, within PFR28_00147 at 172.397 kb on - strand, within PFR28_00147 at 172.399 kb on + strand, within PFR28_00147 at 172.400 kb on - strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.483 kb on + strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.484 kb on - strand, within PFR28_00147 at 172.599 kb on + strand, within PFR28_00147 at 172.599 kb on + strand, within PFR28_00147 at 172.600 kb on - strand, within PFR28_00147 at 172.620 kb on - strand, within PFR28_00147 at 172.689 kb on + strand, within PFR28_00147 at 172.689 kb on + strand, within PFR28_00147 at 172.693 kb on + strand, within PFR28_00147 at 172.693 kb on + strand, within PFR28_00147 at 172.693 kb on + strand, within PFR28_00147 at 172.694 kb on - strand, within PFR28_00147 at 172.778 kb on - strand, within PFR28_00147 at 172.832 kb on - strand at 172.832 kb on - strand at 172.937 kb on + strand at 172.937 kb on + strand at 172.938 kb on - strand at 172.938 kb on - strand at 172.938 kb on - strand at 172.938 kb on - strand at 172.998 kb on - strand at 172.998 kb on - strand at 173.077 kb on + strand at 173.078 kb on - strand at 173.081 kb on + strand at 173.081 kb on + strand at 173.081 kb on + strand at 173.081 kb on + strand at 173.081 kb on + strand at 173.082 kb on - strand at 173.137 kb on + strand, within PFR28_00148 at 173.138 kb on - strand, within PFR28_00148 at 173.138 kb on - strand, within PFR28_00148 at 173.180 kb on + strand, within PFR28_00148 at 173.490 kb on + strand at 173.490 kb on + strand at 173.490 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.523 kb on + strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.524 kb on - strand at 173.595 kb on + strand, within PFR28_00149 at 173.595 kb on + strand, within PFR28_00149 at 173.596 kb on - strand, within PFR28_00149 at 173.596 kb on - strand, within PFR28_00149 at 173.604 kb on + strand, within PFR28_00149 at 173.605 kb on - strand, within PFR28_00149 at 173.655 kb on + strand, within PFR28_00149
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM remove 171,117 + PFR28_00146 0.23 +0.6 171,117 + PFR28_00146 0.23 -0.2 171,117 + PFR28_00146 0.23 -0.2 171,201 + PFR28_00146 0.32 +0.2 171,201 + PFR28_00146 0.32 -0.0 171,201 + PFR28_00146 0.32 -0.4 171,202 - PFR28_00146 0.32 -1.6 171,202 - PFR28_00146 0.32 +0.9 171,202 - PFR28_00146 0.32 -0.7 171,202 - PFR28_00146 0.32 +4.0 171,264 + PFR28_00146 0.38 +1.5 171,264 + PFR28_00146 0.38 -1.0 171,264 + PFR28_00146 0.38 +1.2 171,264 + PFR28_00146 0.38 -0.2 171,264 + PFR28_00146 0.38 -0.6 171,264 + PFR28_00146 0.38 +0.6 171,265 - PFR28_00146 0.38 -1.0 171,265 - PFR28_00146 0.38 -0.6 171,265 - PFR28_00146 0.38 +1.0 171,265 - PFR28_00146 0.38 +0.4 171,321 + PFR28_00146 0.44 +0.4 171,321 + PFR28_00146 0.44 +0.1 171,321 + PFR28_00146 0.44 -1.4 171,322 - PFR28_00146 0.44 +1.4 171,322 - PFR28_00146 0.44 -0.1 171,322 - PFR28_00146 0.44 +0.4 171,322 - PFR28_00146 0.44 +0.8 171,322 - PFR28_00146 0.44 +0.2 171,355 - PFR28_00146 0.48 -1.5 171,355 - PFR28_00146 0.48 -0.8 171,495 + PFR28_00146 0.63 +0.9 171,495 + PFR28_00146 0.63 -0.9 171,495 + PFR28_00146 0.63 -0.2 171,495 + PFR28_00146 0.63 +1.5 171,495 + PFR28_00146 0.63 +0.4 171,495 + PFR28_00146 0.63 -0.8 171,495 + PFR28_00146 0.63 -0.2 171,496 - PFR28_00146 0.63 -0.3 171,496 - PFR28_00146 0.63 -1.0 171,496 - PFR28_00146 0.63 -0.3 171,616 + PFR28_00146 0.76 -1.6 171,688 - PFR28_00146 0.83 +0.1 171,688 - PFR28_00146 0.83 +1.6 171,688 - PFR28_00146 0.83 -0.6 171,688 - PFR28_00146 0.83 +0.4 171,688 - PFR28_00146 0.83 +0.4 171,798 - +0.1 171,843 + +0.3 171,844 - -0.4 171,905 - -1.2 171,905 - -0.4 171,928 + +0.5 171,928 + +0.7 171,928 + +0.4 171,928 + +0.4 171,928 + -0.5 171,928 + +1.5 171,929 - +0.7 171,929 - -1.0 171,929 - +1.6 171,929 - -0.2 171,929 - -0.8 171,930 + +0.6 171,930 + -1.5 171,930 + -0.1 171,930 + +1.1 171,930 + +0.4 171,930 + -0.6 171,930 + +0.1 171,930 + +0.7 171,931 - -1.1 171,931 - -0.5 171,931 - +0.3 171,931 - -1.3 171,931 - +0.8 171,931 - +0.8 171,931 - +0.5 171,931 - +0.5 171,931 - -0.5 171,931 - -1.2 171,931 - -1.0 171,964 + -0.1 171,965 - +0.3 171,986 + -0.6 172,033 + PFR28_00147 0.11 -0.0 172,111 + PFR28_00147 0.19 +0.5 172,111 + PFR28_00147 0.19 -0.1 172,111 + PFR28_00147 0.19 -0.4 172,168 + PFR28_00147 0.25 -0.1 172,168 + PFR28_00147 0.25 -0.3 172,168 + PFR28_00147 0.25 +0.6 172,168 + PFR28_00147 0.25 +0.8 172,169 - PFR28_00147 0.25 +0.9 172,169 - PFR28_00147 0.25 +0.5 172,245 - PFR28_00147 0.33 +0.6 172,291 + PFR28_00147 0.38 -2.3 172,291 + PFR28_00147 0.38 +1.4 172,291 + PFR28_00147 0.38 +0.2 172,291 + PFR28_00147 0.38 -0.2 172,292 - PFR28_00147 0.38 +0.1 172,292 - PFR28_00147 0.38 +0.7 172,292 - PFR28_00147 0.38 +0.4 172,292 - PFR28_00147 0.38 -1.4 172,345 + PFR28_00147 0.43 -1.3 172,345 + PFR28_00147 0.43 +1.1 172,360 + PFR28_00147 0.45 +0.6 172,396 + PFR28_00147 0.48 +1.3 172,396 + PFR28_00147 0.48 -0.3 172,396 + PFR28_00147 0.48 -0.6 172,397 - PFR28_00147 0.49 +0.3 172,399 + PFR28_00147 0.49 +0.0 172,400 - PFR28_00147 0.49 +1.4 172,483 + PFR28_00147 0.57 -0.1 172,483 + PFR28_00147 0.57 -1.8 172,483 + PFR28_00147 0.57 +2.4 172,483 + PFR28_00147 0.57 -0.5 172,483 + PFR28_00147 0.57 +1.2 172,483 + PFR28_00147 0.57 -1.0 172,483 + PFR28_00147 0.57 -0.8 172,483 + PFR28_00147 0.57 -0.4 172,483 + PFR28_00147 0.57 +0.7 172,484 - PFR28_00147 0.58 +0.7 172,484 - PFR28_00147 0.58 -0.7 172,484 - PFR28_00147 0.58 +0.6 172,484 - PFR28_00147 0.58 +0.8 172,484 - PFR28_00147 0.58 +1.4 172,484 - PFR28_00147 0.58 -0.5 172,484 - PFR28_00147 0.58 +0.0 172,484 - PFR28_00147 0.58 +0.6 172,484 - PFR28_00147 0.58 +1.2 172,484 - PFR28_00147 0.58 +1.7 172,484 - PFR28_00147 0.58 +0.2 172,484 - PFR28_00147 0.58 -0.0 172,484 - PFR28_00147 0.58 -0.6 172,484 - PFR28_00147 0.58 -2.5 172,599 + PFR28_00147 0.70 -1.2 172,599 + PFR28_00147 0.70 +0.6 172,600 - PFR28_00147 0.70 -0.6 172,620 - PFR28_00147 0.72 -0.7 172,689 + PFR28_00147 0.79 +0.7 172,689 + PFR28_00147 0.79 -0.1 172,693 + PFR28_00147 0.79 +0.1 172,693 + PFR28_00147 0.79 -0.3 172,693 + PFR28_00147 0.79 +0.6 172,694 - PFR28_00147 0.79 +1.5 172,778 - PFR28_00147 0.88 -0.6 172,832 - -0.4 172,832 - -0.2 172,937 + -0.6 172,937 + -0.4 172,938 - +1.0 172,938 - -0.9 172,938 - +1.5 172,938 - -0.2 172,998 - +0.3 172,998 - +1.8 173,077 + +0.8 173,078 - +1.2 173,081 + +0.2 173,081 + -0.7 173,081 + +0.5 173,081 + +0.7 173,081 + +0.5 173,082 - +2.0 173,137 + PFR28_00148 0.20 +0.7 173,138 - PFR28_00148 0.20 +0.2 173,138 - PFR28_00148 0.20 +0.7 173,180 + PFR28_00148 0.31 +1.5 173,490 + -0.3 173,490 + -0.2 173,490 + -0.8 173,523 + +1.7 173,523 + -1.4 173,523 + +2.5 173,523 + -1.9 173,523 + -0.0 173,523 + +0.5 173,523 + +0.7 173,523 + -0.1 173,523 + -0.0 173,523 + -2.6 173,523 + +1.1 173,523 + +0.3 173,524 - +0.7 173,524 - +0.7 173,524 - +1.4 173,524 - -0.1 173,524 - +0.7 173,524 - -0.4 173,524 - -0.1 173,595 + PFR28_00149 0.14 +0.2 173,595 + PFR28_00149 0.14 -1.0 173,596 - PFR28_00149 0.14 -0.1 173,596 - PFR28_00149 0.14 +0.2 173,604 + PFR28_00149 0.15 -0.0 173,605 - PFR28_00149 0.15 +2.0 173,655 + PFR28_00149 0.19 +0.3
Or see this region's nucleotide sequence