Strain Fitness in Agrobacterium fabrum C58 around Atu5025

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5024 and Atu5025 are separated by 48 nucleotidesAtu5025 and Atu5026 are separated by 99 nucleotidesAtu5026 and Atu5027 are separated by 120 nucleotides Atu5024: Atu5024 - ATP-dependent DNA helicase, at 26,191 to 27,891 Atu5024 Atu5025: Atu5025 - hypothetical protein, at 27,940 to 28,194 Atu5025 Atu5026: Atu5026 - hypothetical protein, at 28,294 to 28,704 Atu5026 Atu5027: Atu5027 - IS 426 transposase, at 28,825 to 29,379 Atu5027 Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1 2 3at 26.944 kb on - strand, within Atu5024at 27.042 kb on - strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.054 kb on + strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.158 kb on - strand, within Atu5024at 27.192 kb on - strand, within Atu5024at 27.194 kb on - strand, within Atu5024at 27.211 kb on - strand, within Atu5024at 27.220 kb on + strand, within Atu5024at 27.221 kb on + strand, within Atu5024at 27.259 kb on - strand, within Atu5024at 27.263 kb on - strand, within Atu5024at 27.263 kb on - strand, within Atu5024at 27.278 kb on - strand, within Atu5024at 27.308 kb on - strand, within Atu5024at 27.321 kb on - strand, within Atu5024at 27.328 kb on - strand, within Atu5024at 27.332 kb on - strand, within Atu5024at 27.365 kb on - strand, within Atu5024at 27.377 kb on + strand, within Atu5024at 27.377 kb on + strand, within Atu5024at 27.384 kb on - strand, within Atu5024at 27.385 kb on - strand, within Atu5024at 27.454 kb on - strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.507 kb on + strand, within Atu5024at 27.513 kb on - strand, within Atu5024at 27.515 kb on - strand, within Atu5024at 27.590 kb on - strand, within Atu5024at 27.597 kb on + strand, within Atu5024at 27.650 kb on - strand, within Atu5024at 27.766 kb on + strandat 27.771 kb on + strandat 27.774 kb on - strandat 27.831 kb on - strandat 27.859 kb on + strandat 27.943 kb on + strandat 27.951 kb on + strandat 27.951 kb on - strandat 28.024 kb on + strand, within Atu5025at 28.032 kb on - strand, within Atu5025at 28.037 kb on - strand, within Atu5025at 28.042 kb on - strand, within Atu5025at 28.042 kb on - strand, within Atu5025at 28.065 kb on - strand, within Atu5025at 28.094 kb on + strand, within Atu5025at 28.100 kb on - strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.154 kb on - strand, within Atu5025at 28.189 kb on + strandat 28.195 kb on - strandat 28.202 kb on - strandat 28.213 kb on + strandat 28.248 kb on + strandat 28.264 kb on + strandat 28.273 kb on + strandat 28.282 kb on + strandat 28.290 kb on - strandat 28.305 kb on - strandat 28.321 kb on + strandat 28.386 kb on - strand, within Atu5026at 28.399 kb on + strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.517 kb on - strand, within Atu5026at 28.639 kb on + strand, within Atu5026at 28.641 kb on - strand, within Atu5026at 28.684 kb on - strandat 28.684 kb on - strandat 28.809 kb on + strandat 28.846 kb on - strandat 28.848 kb on + strandat 28.848 kb on + strandat 28.856 kb on + strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.864 kb on - strandat 28.911 kb on + strand, within Atu5027at 28.911 kb on + strand, within Atu5027at 28.911 kb on + strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.999 kb on - strand, within Atu5027at 29.022 kb on + strand, within Atu5027at 29.023 kb on + strand, within Atu5027at 29.030 kb on - strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.056 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.078 kb on - strand, within Atu5027at 29.105 kb on + strand, within Atu5027at 29.108 kb on - strand, within Atu5027at 29.110 kb on - strand, within Atu5027at 29.124 kb on - strand, within Atu5027at 29.166 kb on + strand, within Atu5027at 29.167 kb on - strand, within Atu5027at 29.172 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.190 kb on - strand, within Atu5027

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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26,944 - Atu5024 0.44 -0.7
27,042 - Atu5024 0.50 -0.2
27,044 + Atu5024 0.50 +1.9
27,044 + Atu5024 0.50 -0.1
27,054 + Atu5024 0.51 +0.7
27,062 - Atu5024 0.51 -0.4
27,062 - Atu5024 0.51 +1.4
27,158 - Atu5024 0.57 +0.2
27,192 - Atu5024 0.59 +3.4
27,194 - Atu5024 0.59 +0.8
27,211 - Atu5024 0.60 -0.2
27,220 + Atu5024 0.60 +2.1
27,221 + Atu5024 0.61 +0.8
27,259 - Atu5024 0.63 +0.1
27,263 - Atu5024 0.63 +0.1
27,263 - Atu5024 0.63 +0.8
27,278 - Atu5024 0.64 +0.7
27,308 - Atu5024 0.66 +0.3
27,321 - Atu5024 0.66 -0.1
27,328 - Atu5024 0.67 -0.0
27,332 - Atu5024 0.67 +3.1
27,365 - Atu5024 0.69 +0.6
27,377 + Atu5024 0.70 +1.4
27,377 + Atu5024 0.70 +0.1
27,384 - Atu5024 0.70 -0.5
27,385 - Atu5024 0.70 -0.5
27,454 - Atu5024 0.74 +0.5
27,505 + Atu5024 0.77 +2.1
27,505 + Atu5024 0.77 +2.1
27,505 + Atu5024 0.77 +0.6
27,507 + Atu5024 0.77 +0.8
27,513 - Atu5024 0.78 +0.8
27,515 - Atu5024 0.78 -0.0
27,590 - Atu5024 0.82 +0.2
27,597 + Atu5024 0.83 +0.5
27,650 - Atu5024 0.86 +2.6
27,766 + +1.8
27,771 + +1.2
27,774 - -0.6
27,831 - +1.8
27,859 + +0.9
27,943 + -0.5
27,951 + +0.3
27,951 - -0.0
28,024 + Atu5025 0.33 -0.4
28,032 - Atu5025 0.36 +0.8
28,037 - Atu5025 0.38 -0.5
28,042 - Atu5025 0.40 +0.6
28,042 - Atu5025 0.40 -0.6
28,065 - Atu5025 0.49 +0.8
28,094 + Atu5025 0.60 +0.1
28,100 - Atu5025 0.63 +1.3
28,141 + Atu5025 0.79 +0.9
28,141 + Atu5025 0.79 +1.3
28,141 + Atu5025 0.79 +1.1
28,141 + Atu5025 0.79 +0.3
28,141 + Atu5025 0.79 -0.4
28,141 + Atu5025 0.79 +2.3
28,149 - Atu5025 0.82 +0.6
28,149 - Atu5025 0.82 -0.2
28,149 - Atu5025 0.82 +1.2
28,149 - Atu5025 0.82 -0.8
28,149 - Atu5025 0.82 +0.9
28,149 - Atu5025 0.82 -0.2
28,149 - Atu5025 0.82 +0.4
28,154 - Atu5025 0.84 +1.9
28,189 + +0.2
28,195 - +1.8
28,202 - +0.7
28,213 + -0.1
28,248 + +0.4
28,264 + -1.3
28,273 + +1.4
28,282 + +2.6
28,290 - -0.7
28,305 - -0.4
28,321 + +1.1
28,386 - Atu5026 0.22 +1.6
28,399 + Atu5026 0.26 +0.9
28,407 - Atu5026 0.27 +1.7
28,407 - Atu5026 0.27 +1.7
28,517 - Atu5026 0.54 +0.8
28,639 + Atu5026 0.84 -0.2
28,641 - Atu5026 0.84 -0.9
28,684 - +1.1
28,684 - +0.8
28,809 + -1.2
28,846 - +1.1
28,848 + +2.2
28,848 + +0.9
28,856 + +1.2
28,856 - +0.7
28,856 - +1.8
28,856 - -0.4
28,856 - -0.0
28,864 - +0.6
28,911 + Atu5027 0.15 -0.1
28,911 + Atu5027 0.15 +0.6
28,911 + Atu5027 0.15 +0.8
28,919 - Atu5027 0.17 +2.1
28,919 - Atu5027 0.17 -0.1
28,919 - Atu5027 0.17 +0.9
28,999 - Atu5027 0.31 -0.3
29,022 + Atu5027 0.35 +1.1
29,023 + Atu5027 0.36 +1.3
29,030 - Atu5027 0.37 +0.8
29,044 + Atu5027 0.39 -0.2
29,044 + Atu5027 0.39 +1.0
29,052 - Atu5027 0.41 +1.0
29,052 - Atu5027 0.41 +0.2
29,056 + Atu5027 0.42 +2.2
29,063 + Atu5027 0.43 +2.1
29,063 + Atu5027 0.43 +0.1
29,071 - Atu5027 0.44 -0.5
29,071 - Atu5027 0.44 -0.5
29,078 - Atu5027 0.46 -0.1
29,105 + Atu5027 0.50 -0.9
29,108 - Atu5027 0.51 +0.8
29,110 - Atu5027 0.51 +1.8
29,124 - Atu5027 0.54 -0.8
29,166 + Atu5027 0.61 -0.2
29,167 - Atu5027 0.62 +1.6
29,172 - Atu5027 0.63 +1.8
29,180 - Atu5027 0.64 +2.1
29,180 - Atu5027 0.64 -0.6
29,190 - Atu5027 0.66 +0.4

Or see this region's nucleotide sequence