Strain Fitness in Agrobacterium fabrum C58 around Atu0396

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0395 and Atu0396 are separated by 297 nucleotidesAtu0396 and Atu0397 are separated by 169 nucleotides Atu0395: Atu0395 - hypothetical protein, at 388,283 to 389,083 Atu0395 Atu0396: Atu0396 - coenzyme A transferase, at 389,381 to 390,877 Atu0396 Atu0397: Atu0397 - hypothetical protein, at 391,047 to 392,369 Atu0397 Position (kb) 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2 3at 388.448 kb on + strand, within Atu0395at 388.455 kb on + strand, within Atu0395at 388.578 kb on + strand, within Atu0395at 388.578 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.586 kb on - strand, within Atu0395at 388.640 kb on - strand, within Atu0395at 388.684 kb on + strand, within Atu0395at 388.704 kb on - strand, within Atu0395at 388.719 kb on + strand, within Atu0395at 388.750 kb on + strand, within Atu0395at 388.823 kb on + strand, within Atu0395at 388.833 kb on + strand, within Atu0395at 388.861 kb on - strand, within Atu0395at 388.898 kb on + strand, within Atu0395at 388.910 kb on + strand, within Atu0395at 388.915 kb on + strand, within Atu0395at 388.918 kb on - strand, within Atu0395at 388.923 kb on - strand, within Atu0395at 388.945 kb on - strand, within Atu0395at 388.959 kb on - strand, within Atu0395at 388.971 kb on - strand, within Atu0395at 389.006 kb on - strandat 389.030 kb on - strandat 389.073 kb on - strandat 389.083 kb on - strandat 389.169 kb on + strandat 389.187 kb on - strandat 389.189 kb on + strandat 389.196 kb on + strandat 389.205 kb on - strandat 389.276 kb on + strandat 389.290 kb on - strandat 389.331 kb on - strandat 389.338 kb on + strandat 389.338 kb on + strandat 389.377 kb on - strandat 389.413 kb on + strandat 389.456 kb on - strandat 389.498 kb on + strandat 389.503 kb on + strandat 389.511 kb on - strandat 389.511 kb on - strandat 389.511 kb on - strandat 389.525 kb on - strandat 389.544 kb on - strand, within Atu0396at 389.556 kb on + strand, within Atu0396at 389.680 kb on + strand, within Atu0396at 389.700 kb on + strand, within Atu0396at 389.736 kb on - strand, within Atu0396at 389.751 kb on - strand, within Atu0396at 389.751 kb on - strand, within Atu0396at 389.751 kb on - strand, within Atu0396at 389.865 kb on - strand, within Atu0396at 389.965 kb on + strand, within Atu0396at 389.965 kb on + strand, within Atu0396at 390.018 kb on + strand, within Atu0396at 390.026 kb on - strand, within Atu0396at 390.054 kb on - strand, within Atu0396at 390.189 kb on - strand, within Atu0396at 390.327 kb on - strand, within Atu0396at 390.327 kb on - strand, within Atu0396at 390.386 kb on - strand, within Atu0396at 390.449 kb on + strand, within Atu0396at 390.554 kb on - strand, within Atu0396at 390.629 kb on - strand, within Atu0396at 390.683 kb on - strand, within Atu0396at 390.698 kb on - strand, within Atu0396at 390.702 kb on - strand, within Atu0396at 390.713 kb on + strand, within Atu0396at 390.737 kb on + strandat 390.773 kb on - strandat 390.834 kb on + strandat 390.879 kb on - strandat 390.925 kb on + strandat 390.957 kb on + strandat 391.021 kb on + strandat 391.134 kb on + strandat 391.150 kb on + strandat 391.288 kb on + strand, within Atu0397at 391.322 kb on + strand, within Atu0397at 391.324 kb on - strand, within Atu0397at 391.362 kb on - strand, within Atu0397at 391.526 kb on - strand, within Atu0397at 391.529 kb on + strand, within Atu0397at 391.644 kb on + strand, within Atu0397at 391.657 kb on - strand, within Atu0397at 391.662 kb on + strand, within Atu0397at 391.739 kb on - strand, within Atu0397at 391.794 kb on + strand, within Atu0397

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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388,448 + Atu0395 0.21 -0.2
388,455 + Atu0395 0.21 +0.5
388,578 + Atu0395 0.37 +0.2
388,578 + Atu0395 0.37 +0.1
388,583 + Atu0395 0.37 +0.2
388,583 + Atu0395 0.37 +0.3
388,583 + Atu0395 0.37 -0.3
388,586 - Atu0395 0.38 +0.0
388,640 - Atu0395 0.45 +0.9
388,684 + Atu0395 0.50 +0.8
388,704 - Atu0395 0.53 +0.6
388,719 + Atu0395 0.54 -0.5
388,750 + Atu0395 0.58 +0.4
388,823 + Atu0395 0.67 +0.4
388,833 + Atu0395 0.69 +0.1
388,861 - Atu0395 0.72 -1.2
388,898 + Atu0395 0.77 -0.4
388,910 + Atu0395 0.78 +0.9
388,915 + Atu0395 0.79 +1.0
388,918 - Atu0395 0.79 +0.3
388,923 - Atu0395 0.80 -1.5
388,945 - Atu0395 0.83 +0.1
388,959 - Atu0395 0.84 +0.3
388,971 - Atu0395 0.86 -0.4
389,006 - -0.2
389,030 - -2.1
389,073 - +1.1
389,083 - -0.1
389,169 + +0.1
389,187 - +0.5
389,189 + +0.2
389,196 + -0.1
389,205 - -0.1
389,276 + -0.1
389,290 - -0.2
389,331 - +0.3
389,338 + +0.1
389,338 + -0.6
389,377 - +0.3
389,413 + +3.2
389,456 - +0.0
389,498 + -1.0
389,503 + -0.2
389,511 - +0.5
389,511 - -0.2
389,511 - +0.2
389,525 - +0.0
389,544 - Atu0396 0.11 +0.5
389,556 + Atu0396 0.12 +0.9
389,680 + Atu0396 0.20 +0.2
389,700 + Atu0396 0.21 +1.0
389,736 - Atu0396 0.24 +0.3
389,751 - Atu0396 0.25 -0.4
389,751 - Atu0396 0.25 +0.8
389,751 - Atu0396 0.25 +0.2
389,865 - Atu0396 0.32 +1.0
389,965 + Atu0396 0.39 -0.1
389,965 + Atu0396 0.39 -0.1
390,018 + Atu0396 0.43 -2.1
390,026 - Atu0396 0.43 +0.2
390,054 - Atu0396 0.45 -0.4
390,189 - Atu0396 0.54 -0.0
390,327 - Atu0396 0.63 -0.3
390,327 - Atu0396 0.63 -0.0
390,386 - Atu0396 0.67 +0.2
390,449 + Atu0396 0.71 +0.5
390,554 - Atu0396 0.78 +0.7
390,629 - Atu0396 0.83 +0.2
390,683 - Atu0396 0.87 +0.1
390,698 - Atu0396 0.88 -0.5
390,702 - Atu0396 0.88 -0.1
390,713 + Atu0396 0.89 -0.3
390,737 + +0.2
390,773 - +0.1
390,834 + +0.2
390,879 - -0.8
390,925 + +0.6
390,957 + +0.3
391,021 + +0.3
391,134 + +0.9
391,150 + +0.6
391,288 + Atu0397 0.18 -0.2
391,322 + Atu0397 0.21 +0.6
391,324 - Atu0397 0.21 -0.3
391,362 - Atu0397 0.24 -0.1
391,526 - Atu0397 0.36 -0.5
391,529 + Atu0397 0.36 +0.4
391,644 + Atu0397 0.45 +0.5
391,657 - Atu0397 0.46 +0.5
391,662 + Atu0397 0.46 -0.4
391,739 - Atu0397 0.52 +0.3
391,794 + Atu0397 0.56 -1.1

Or see this region's nucleotide sequence