Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0370 and Atu0371 are separated by 14 nucleotides Atu0371 and Atu0372 are separated by 82 nucleotides
Atu0370: Atu0370 - succinyl-diaminopimelate desuccinylase, at 363,738 to 364,934
Atu0370
Atu0371: Atu0371 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 364,949 to 365,803
Atu0371
Atu0372: Atu0372 - hypothetical protein, at 365,886 to 366,806
Atu0372
Position (kb) 364
365
366 Strain fitness (log2 ratio) -1
0
1 at 364.942 kb on + strand at 365.907 kb on + strand at 365.915 kb on - strand at 365.930 kb on + strand at 365.986 kb on + strand, within Atu0372 at 365.996 kb on - strand, within Atu0372 at 366.012 kb on + strand, within Atu0372 at 366.020 kb on - strand, within Atu0372 at 366.020 kb on - strand, within Atu0372 at 366.029 kb on + strand, within Atu0372 at 366.037 kb on - strand, within Atu0372 at 366.318 kb on - strand, within Atu0372 at 366.320 kb on + strand, within Atu0372 at 366.320 kb on + strand, within Atu0372 at 366.328 kb on - strand, within Atu0372 at 366.328 kb on - strand, within Atu0372 at 366.364 kb on - strand, within Atu0372 at 366.364 kb on - strand, within Atu0372 at 366.446 kb on + strand, within Atu0372 at 366.479 kb on + strand, within Atu0372 at 366.479 kb on + strand, within Atu0372 at 366.486 kb on - strand, within Atu0372 at 366.487 kb on - strand, within Atu0372 at 366.487 kb on - strand, within Atu0372 at 366.490 kb on + strand, within Atu0372 at 366.551 kb on + strand, within Atu0372 at 366.559 kb on - strand, within Atu0372 at 366.559 kb on - strand, within Atu0372 at 366.569 kb on - strand, within Atu0372 at 366.620 kb on + strand, within Atu0372 at 366.628 kb on - strand, within Atu0372 at 366.628 kb on - strand, within Atu0372 at 366.640 kb on + strand, within Atu0372 at 366.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 364,942 + +0.5 365,907 + +0.3 365,915 - +0.9 365,930 + -0.2 365,986 + Atu0372 0.11 +0.1 365,996 - Atu0372 0.12 +0.3 366,012 + Atu0372 0.14 +0.2 366,020 - Atu0372 0.15 -0.1 366,020 - Atu0372 0.15 -1.3 366,029 + Atu0372 0.16 +0.1 366,037 - Atu0372 0.16 +0.3 366,318 - Atu0372 0.47 +0.2 366,320 + Atu0372 0.47 -0.7 366,320 + Atu0372 0.47 -0.7 366,328 - Atu0372 0.48 +0.0 366,328 - Atu0372 0.48 -0.4 366,364 - Atu0372 0.52 +0.3 366,364 - Atu0372 0.52 -0.6 366,446 + Atu0372 0.61 +0.0 366,479 + Atu0372 0.64 -0.0 366,479 + Atu0372 0.64 +1.5 366,486 - Atu0372 0.65 -1.2 366,487 - Atu0372 0.65 +0.4 366,487 - Atu0372 0.65 +1.3 366,490 + Atu0372 0.66 +0.3 366,551 + Atu0372 0.72 +0.4 366,559 - Atu0372 0.73 -0.1 366,559 - Atu0372 0.73 +0.6 366,569 - Atu0372 0.74 +0.0 366,620 + Atu0372 0.80 +0.9 366,628 - Atu0372 0.81 -0.1 366,628 - Atu0372 0.81 +0.8 366,640 + Atu0372 0.82 -0.1 366,748 + -1.5
Or see this region's nucleotide sequence