Strain Fitness in Agrobacterium fabrum C58 around Atu0171

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0169 and Atu0170 overlap by 4 nucleotidesAtu0170 and Atu0171 are separated by 283 nucleotidesAtu0171 and Atu0172 overlap by 1 nucleotides Atu0169: Atu0169 - hypothetical protein, at 172,980 to 174,116 Atu0169 Atu0170: Atu0170 - hypothetical protein, at 174,113 to 174,802 Atu0170 Atu0171: Atu0171 - ABC transporter, membrane spanning protein (phosphonate), at 175,086 to 176,435 Atu0171 Atu0172: Atu0172 - ABC transporter, membrane spanning protein (phosphonate), at 176,435 to 177,421 Atu0172 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 174.091 kb on + strandat 174.099 kb on - strandat 174.109 kb on - strandat 174.310 kb on - strand, within Atu0170at 174.347 kb on + strand, within Atu0170at 174.347 kb on + strand, within Atu0170at 174.347 kb on + strand, within Atu0170at 174.355 kb on - strand, within Atu0170at 174.419 kb on + strand, within Atu0170at 174.427 kb on - strand, within Atu0170at 174.429 kb on + strand, within Atu0170at 174.437 kb on - strand, within Atu0170at 174.623 kb on + strand, within Atu0170at 174.631 kb on - strand, within Atu0170at 174.719 kb on - strand, within Atu0170at 174.748 kb on - strandat 174.883 kb on - strandat 174.980 kb on - strandat 174.995 kb on + strandat 174.998 kb on - strandat 175.003 kb on - strandat 175.010 kb on + strandat 175.010 kb on + strandat 175.028 kb on - strandat 175.172 kb on - strandat 175.177 kb on - strandat 175.331 kb on - strand, within Atu0171at 175.384 kb on + strand, within Atu0171at 175.385 kb on - strand, within Atu0171at 175.418 kb on + strand, within Atu0171at 175.423 kb on + strand, within Atu0171at 175.423 kb on + strand, within Atu0171at 175.423 kb on + strand, within Atu0171at 175.423 kb on + strand, within Atu0171at 175.431 kb on - strand, within Atu0171at 175.431 kb on - strand, within Atu0171at 175.431 kb on - strand, within Atu0171at 175.431 kb on - strand, within Atu0171at 175.437 kb on - strand, within Atu0171at 175.461 kb on + strand, within Atu0171at 175.524 kb on - strand, within Atu0171at 175.524 kb on - strand, within Atu0171at 175.524 kb on - strand, within Atu0171at 175.634 kb on - strand, within Atu0171at 175.644 kb on - strand, within Atu0171at 175.689 kb on - strand, within Atu0171at 175.772 kb on + strand, within Atu0171at 175.777 kb on + strand, within Atu0171at 175.804 kb on + strand, within Atu0171at 175.876 kb on + strand, within Atu0171at 175.877 kb on - strand, within Atu0171at 175.881 kb on + strand, within Atu0171at 175.883 kb on - strand, within Atu0171at 175.883 kb on - strand, within Atu0171at 175.934 kb on - strand, within Atu0171at 175.957 kb on - strand, within Atu0171at 176.048 kb on + strand, within Atu0171at 176.056 kb on - strand, within Atu0171at 176.059 kb on + strand, within Atu0171at 176.122 kb on - strand, within Atu0171at 176.199 kb on + strand, within Atu0171at 176.256 kb on + strand, within Atu0171at 176.259 kb on - strand, within Atu0171at 176.270 kb on - strand, within Atu0171at 176.270 kb on - strand, within Atu0171at 176.270 kb on - strand, within Atu0171at 176.339 kb on + strandat 176.381 kb on + strandat 176.407 kb on + strandat 176.425 kb on - strandat 176.433 kb on + strandat 176.487 kb on - strandat 176.538 kb on - strand, within Atu0172at 176.673 kb on - strand, within Atu0172at 176.673 kb on - strand, within Atu0172at 176.673 kb on - strand, within Atu0172at 176.719 kb on + strand, within Atu0172at 176.752 kb on - strand, within Atu0172at 176.785 kb on - strand, within Atu0172at 176.856 kb on + strand, within Atu0172at 176.864 kb on - strand, within Atu0172at 176.868 kb on + strand, within Atu0172at 176.917 kb on + strand, within Atu0172at 176.927 kb on + strand, within Atu0172at 176.993 kb on + strand, within Atu0172at 177.019 kb on + strand, within Atu0172at 177.140 kb on - strand, within Atu0172at 177.195 kb on + strand, within Atu0172at 177.301 kb on - strand, within Atu0172at 177.320 kb on - strand, within Atu0172at 177.402 kb on - strandat 177.407 kb on - strandat 177.409 kb on + strandat 177.409 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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174,091 + +0.8
174,099 - +0.5
174,109 - -0.5
174,310 - Atu0170 0.29 -1.0
174,347 + Atu0170 0.34 +0.7
174,347 + Atu0170 0.34 +0.0
174,347 + Atu0170 0.34 -0.4
174,355 - Atu0170 0.35 -0.8
174,419 + Atu0170 0.44 +0.5
174,427 - Atu0170 0.46 +0.2
174,429 + Atu0170 0.46 -0.3
174,437 - Atu0170 0.47 -0.4
174,623 + Atu0170 0.74 -0.2
174,631 - Atu0170 0.75 -0.9
174,719 - Atu0170 0.88 -0.2
174,748 - -0.2
174,883 - -0.0
174,980 - +0.2
174,995 + +0.6
174,998 - +1.2
175,003 - +0.2
175,010 + +0.3
175,010 + -2.2
175,028 - +0.6
175,172 - +0.1
175,177 - +0.0
175,331 - Atu0171 0.18 -0.8
175,384 + Atu0171 0.22 +0.1
175,385 - Atu0171 0.22 +0.4
175,418 + Atu0171 0.25 +0.1
175,423 + Atu0171 0.25 -0.0
175,423 + Atu0171 0.25 +0.1
175,423 + Atu0171 0.25 +0.0
175,423 + Atu0171 0.25 -0.2
175,431 - Atu0171 0.26 -0.9
175,431 - Atu0171 0.26 +0.6
175,431 - Atu0171 0.26 -0.8
175,431 - Atu0171 0.26 -0.3
175,437 - Atu0171 0.26 +0.0
175,461 + Atu0171 0.28 -0.5
175,524 - Atu0171 0.32 -0.7
175,524 - Atu0171 0.32 -0.3
175,524 - Atu0171 0.32 +0.3
175,634 - Atu0171 0.41 +0.4
175,644 - Atu0171 0.41 -0.2
175,689 - Atu0171 0.45 -0.2
175,772 + Atu0171 0.51 -0.2
175,777 + Atu0171 0.51 -0.5
175,804 + Atu0171 0.53 +0.1
175,876 + Atu0171 0.59 -0.1
175,877 - Atu0171 0.59 -1.0
175,881 + Atu0171 0.59 -0.2
175,883 - Atu0171 0.59 -0.8
175,883 - Atu0171 0.59 -0.1
175,934 - Atu0171 0.63 +0.8
175,957 - Atu0171 0.65 -0.6
176,048 + Atu0171 0.71 -0.6
176,056 - Atu0171 0.72 -0.7
176,059 + Atu0171 0.72 -0.2
176,122 - Atu0171 0.77 +0.3
176,199 + Atu0171 0.82 +0.5
176,256 + Atu0171 0.87 +1.3
176,259 - Atu0171 0.87 -0.5
176,270 - Atu0171 0.88 -0.0
176,270 - Atu0171 0.88 -0.4
176,270 - Atu0171 0.88 -0.4
176,339 + -0.3
176,381 + -0.0
176,407 + +0.1
176,425 - -0.1
176,433 + +0.1
176,487 - +0.4
176,538 - Atu0172 0.10 +0.3
176,673 - Atu0172 0.24 +0.1
176,673 - Atu0172 0.24 +0.6
176,673 - Atu0172 0.24 -0.1
176,719 + Atu0172 0.29 +0.9
176,752 - Atu0172 0.32 +0.7
176,785 - Atu0172 0.35 +0.0
176,856 + Atu0172 0.43 +0.2
176,864 - Atu0172 0.43 -0.3
176,868 + Atu0172 0.44 +0.9
176,917 + Atu0172 0.49 -0.1
176,927 + Atu0172 0.50 +0.1
176,993 + Atu0172 0.57 -0.5
177,019 + Atu0172 0.59 -0.4
177,140 - Atu0172 0.71 -0.6
177,195 + Atu0172 0.77 +0.2
177,301 - Atu0172 0.88 +0.6
177,320 - Atu0172 0.90 +1.0
177,402 - -1.8
177,407 - +0.4
177,409 + +0.1
177,409 + -1.0

Or see this region's nucleotide sequence