Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4811

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4809 and PfGW456L13_4810 are separated by 2 nucleotidesPfGW456L13_4810 and PfGW456L13_4811 are separated by 153 nucleotidesPfGW456L13_4811 and PfGW456L13_4812 overlap by 4 nucleotides PfGW456L13_4809 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,370,633 to 5,371,025 _4809 PfGW456L13_4810 - POSSIBLE MEMBRANE PROTEIN, at 5,371,028 to 5,371,663 _4810 PfGW456L13_4811 - tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase, at 5,371,817 to 5,372,596 _4811 PfGW456L13_4812 - tRNA (5-methoxyuridine) 34 synthase, at 5,372,593 to 5,373,549 _4812 Position (kb) 5371 5372 5373Strain fitness (log2 ratio) -2 -1 0 1 2at 5371.074 kb on - strandat 5371.301 kb on + strand, within PfGW456L13_4810at 5371.301 kb on + strand, within PfGW456L13_4810at 5371.301 kb on + strand, within PfGW456L13_4810at 5371.302 kb on - strand, within PfGW456L13_4810at 5371.425 kb on - strand, within PfGW456L13_4810at 5371.589 kb on + strand, within PfGW456L13_4810at 5371.590 kb on - strand, within PfGW456L13_4810at 5371.590 kb on - strand, within PfGW456L13_4810at 5371.607 kb on + strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.694 kb on + strandat 5371.694 kb on + strandat 5371.694 kb on + strandat 5371.695 kb on - strandat 5371.695 kb on - strandat 5371.695 kb on - strandat 5371.737 kb on + strandat 5371.737 kb on + strandat 5371.737 kb on + strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.835 kb on + strandat 5371.835 kb on + strandat 5371.835 kb on + strandat 5372.036 kb on + strand, within PfGW456L13_4811at 5372.036 kb on + strand, within PfGW456L13_4811at 5372.037 kb on - strand, within PfGW456L13_4811at 5372.037 kb on - strand, within PfGW456L13_4811at 5372.037 kb on - strand, within PfGW456L13_4811at 5372.037 kb on - strand, within PfGW456L13_4811at 5372.037 kb on - strand, within PfGW456L13_4811at 5372.123 kb on - strand, within PfGW456L13_4811at 5372.123 kb on - strand, within PfGW456L13_4811at 5372.566 kb on + strandat 5372.566 kb on + strandat 5372.566 kb on + strandat 5372.567 kb on - strandat 5372.823 kb on + strand, within PfGW456L13_4812at 5372.823 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5373.079 kb on + strand, within PfGW456L13_4812at 5373.079 kb on + strand, within PfGW456L13_4812at 5373.179 kb on - strand, within PfGW456L13_4812at 5373.179 kb on - strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.563 kb on - strandat 5373.563 kb on - strandat 5373.563 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
5,371,074 - +1.7
5,371,301 + PfGW456L13_4810 0.43 +0.1
5,371,301 + PfGW456L13_4810 0.43 +0.0
5,371,301 + PfGW456L13_4810 0.43 -1.3
5,371,302 - PfGW456L13_4810 0.43 +0.4
5,371,425 - PfGW456L13_4810 0.62 +0.4
5,371,589 + PfGW456L13_4810 0.88 +1.0
5,371,590 - PfGW456L13_4810 0.88 +0.1
5,371,590 - PfGW456L13_4810 0.88 +1.1
5,371,607 + +0.1
5,371,608 - -0.5
5,371,608 - +1.7
5,371,608 - +0.4
5,371,608 - -0.6
5,371,608 - +0.5
5,371,694 + -1.4
5,371,694 + +0.9
5,371,694 + -0.3
5,371,695 - -0.1
5,371,695 - +0.2
5,371,695 - +1.3
5,371,737 + -0.7
5,371,737 + +1.2
5,371,737 + +0.7
5,371,738 - -0.3
5,371,738 - -0.7
5,371,738 - -0.4
5,371,738 - +1.0
5,371,835 + -0.2
5,371,835 + +0.4
5,371,835 + -0.7
5,372,036 + PfGW456L13_4811 0.28 -0.4
5,372,036 + PfGW456L13_4811 0.28 +0.3
5,372,037 - PfGW456L13_4811 0.28 +1.2
5,372,037 - PfGW456L13_4811 0.28 -0.1
5,372,037 - PfGW456L13_4811 0.28 -0.5
5,372,037 - PfGW456L13_4811 0.28 -0.1
5,372,037 - PfGW456L13_4811 0.28 -1.2
5,372,123 - PfGW456L13_4811 0.39 -0.5
5,372,123 - PfGW456L13_4811 0.39 -1.4
5,372,566 + -0.0
5,372,566 + +0.9
5,372,566 + +1.4
5,372,567 - -1.9
5,372,823 + PfGW456L13_4812 0.24 -0.8
5,372,823 + PfGW456L13_4812 0.24 -0.3
5,372,986 + PfGW456L13_4812 0.41 -0.4
5,372,986 + PfGW456L13_4812 0.41 -0.6
5,372,986 + PfGW456L13_4812 0.41 -0.6
5,372,986 + PfGW456L13_4812 0.41 -0.8
5,372,986 + PfGW456L13_4812 0.41 +0.1
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 -0.8
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 +0.4
5,372,986 + PfGW456L13_4812 0.41 -0.4
5,372,986 + PfGW456L13_4812 0.41 -0.1
5,372,986 + PfGW456L13_4812 0.41 -1.3
5,372,986 + PfGW456L13_4812 0.41 +0.1
5,372,986 + PfGW456L13_4812 0.41 +0.1
5,372,986 + PfGW456L13_4812 0.41 -0.7
5,372,986 + PfGW456L13_4812 0.41 -1.1
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 +1.8
5,372,986 + PfGW456L13_4812 0.41 +0.4
5,372,986 + PfGW456L13_4812 0.41 +1.7
5,372,986 + PfGW456L13_4812 0.41 -1.4
5,372,987 - PfGW456L13_4812 0.41 +0.0
5,372,987 - PfGW456L13_4812 0.41 -0.0
5,372,987 - PfGW456L13_4812 0.41 -0.2
5,372,987 - PfGW456L13_4812 0.41 -1.2
5,372,987 - PfGW456L13_4812 0.41 -0.6
5,372,987 - PfGW456L13_4812 0.41 -0.4
5,372,987 - PfGW456L13_4812 0.41 -2.1
5,372,987 - PfGW456L13_4812 0.41 -0.7
5,372,987 - PfGW456L13_4812 0.41 -1.1
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 -1.5
5,372,987 - PfGW456L13_4812 0.41 -0.9
5,372,987 - PfGW456L13_4812 0.41 +0.3
5,372,987 - PfGW456L13_4812 0.41 -1.1
5,372,987 - PfGW456L13_4812 0.41 +0.7
5,372,987 - PfGW456L13_4812 0.41 -2.3
5,372,987 - PfGW456L13_4812 0.41 -0.9
5,372,987 - PfGW456L13_4812 0.41 -0.4
5,372,987 - PfGW456L13_4812 0.41 -0.2
5,372,987 - PfGW456L13_4812 0.41 -0.7
5,372,987 - PfGW456L13_4812 0.41 -1.1
5,372,987 - PfGW456L13_4812 0.41 +0.5
5,372,987 - PfGW456L13_4812 0.41 -0.2
5,372,987 - PfGW456L13_4812 0.41 -0.4
5,372,987 - PfGW456L13_4812 0.41 -1.0
5,372,987 - PfGW456L13_4812 0.41 +0.4
5,372,987 - PfGW456L13_4812 0.41 -1.5
5,373,079 + PfGW456L13_4812 0.51 -0.3
5,373,079 + PfGW456L13_4812 0.51 -1.4
5,373,179 - PfGW456L13_4812 0.61 +0.3
5,373,179 - PfGW456L13_4812 0.61 -0.7
5,373,451 + PfGW456L13_4812 0.90 -0.8
5,373,451 + PfGW456L13_4812 0.90 -0.0
5,373,451 + PfGW456L13_4812 0.90 -1.0
5,373,452 - PfGW456L13_4812 0.90 +1.4
5,373,452 - PfGW456L13_4812 0.90 +0.6
5,373,452 - PfGW456L13_4812 0.90 -1.3
5,373,563 - +0.8
5,373,563 - +0.6
5,373,563 - -0.5

Or see this region's nucleotide sequence