Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_316

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_315 and PfGW456L13_316 are separated by 264 nucleotidesPfGW456L13_316 and PfGW456L13_317 are separated by 10 nucleotides PfGW456L13_315 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 368,995 to 369,951 _315 PfGW456L13_316 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 370,216 to 371,019 _316 PfGW456L13_317 - Imidazolonepropionase (EC 3.5.2.7) (from data), at 371,030 to 372,235 _317 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1at 369.500 kb on + strand, within PfGW456L13_315at 369.500 kb on + strand, within PfGW456L13_315at 369.500 kb on + strand, within PfGW456L13_315at 369.501 kb on - strand, within PfGW456L13_315at 369.568 kb on + strand, within PfGW456L13_315at 369.568 kb on + strand, within PfGW456L13_315at 369.568 kb on + strand, within PfGW456L13_315at 369.568 kb on + strand, within PfGW456L13_315at 369.568 kb on + strand, within PfGW456L13_315at 369.569 kb on - strand, within PfGW456L13_315at 369.569 kb on - strand, within PfGW456L13_315at 369.569 kb on - strand, within PfGW456L13_315at 369.569 kb on - strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.572 kb on + strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.573 kb on - strand, within PfGW456L13_315at 369.951 kb on + strandat 369.951 kb on + strandat 369.978 kb on - strandat 370.018 kb on + strandat 370.018 kb on + strandat 370.019 kb on - strandat 370.019 kb on - strandat 370.036 kb on + strandat 370.080 kb on + strandat 370.081 kb on - strandat 370.081 kb on - strandat 370.106 kb on + strandat 370.106 kb on + strandat 370.106 kb on + strandat 370.107 kb on - strandat 370.107 kb on - strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.159 kb on + strandat 370.159 kb on + strandat 370.159 kb on + strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.226 kb on + strandat 370.226 kb on + strandat 370.226 kb on + strandat 370.227 kb on - strandat 370.227 kb on - strandat 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.649 kb on + strand, within PfGW456L13_316at 370.650 kb on - strand, within PfGW456L13_316at 370.674 kb on - strand, within PfGW456L13_316at 370.772 kb on + strand, within PfGW456L13_316at 370.773 kb on - strand, within PfGW456L13_316at 370.773 kb on - strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.869 kb on - strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 371.014 kb on - strandat 371.031 kb on + strandat 371.031 kb on + strandat 371.032 kb on - strandat 371.032 kb on - strandat 371.092 kb on - strandat 371.092 kb on - strandat 371.380 kb on - strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.604 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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369,500 + PfGW456L13_315 0.53 -0.9
369,500 + PfGW456L13_315 0.53 -0.8
369,500 + PfGW456L13_315 0.53 +0.3
369,501 - PfGW456L13_315 0.53 -1.5
369,568 + PfGW456L13_315 0.60 +0.1
369,568 + PfGW456L13_315 0.60 +0.3
369,568 + PfGW456L13_315 0.60 +0.3
369,568 + PfGW456L13_315 0.60 +0.7
369,568 + PfGW456L13_315 0.60 -0.1
369,569 - PfGW456L13_315 0.60 -0.1
369,569 - PfGW456L13_315 0.60 -0.5
369,569 - PfGW456L13_315 0.60 +0.2
369,569 - PfGW456L13_315 0.60 -1.2
369,572 + PfGW456L13_315 0.60 +0.1
369,572 + PfGW456L13_315 0.60 -0.7
369,572 + PfGW456L13_315 0.60 +0.8
369,572 + PfGW456L13_315 0.60 -0.1
369,572 + PfGW456L13_315 0.60 +1.0
369,572 + PfGW456L13_315 0.60 -0.3
369,572 + PfGW456L13_315 0.60 -0.4
369,572 + PfGW456L13_315 0.60 -0.2
369,572 + PfGW456L13_315 0.60 +0.0
369,572 + PfGW456L13_315 0.60 -1.9
369,572 + PfGW456L13_315 0.60 +0.1
369,573 - PfGW456L13_315 0.60 +0.3
369,573 - PfGW456L13_315 0.60 -0.7
369,573 - PfGW456L13_315 0.60 +1.0
369,573 - PfGW456L13_315 0.60 -0.7
369,573 - PfGW456L13_315 0.60 -1.1
369,573 - PfGW456L13_315 0.60 -1.5
369,573 - PfGW456L13_315 0.60 +0.3
369,951 + -1.2
369,951 + +0.5
369,978 - -0.5
370,018 + +0.2
370,018 + -1.9
370,019 - +0.5
370,019 - +0.3
370,036 + +0.2
370,080 + +0.8
370,081 - -0.6
370,081 - +0.1
370,106 + +0.5
370,106 + -0.9
370,106 + -0.4
370,107 - -0.8
370,107 - +0.3
370,153 + -0.4
370,153 + -0.6
370,153 + +0.6
370,153 + -2.6
370,153 + +0.0
370,153 + -0.5
370,153 + +1.3
370,153 + -0.1
370,153 + +0.1
370,153 + +0.1
370,153 + -0.5
370,153 + -0.1
370,153 + -0.3
370,153 + +0.5
370,153 + -0.3
370,154 - +0.3
370,154 - -0.2
370,154 - -1.7
370,154 - +1.0
370,154 - +0.0
370,154 - -0.4
370,154 - +0.3
370,154 - -1.0
370,154 - +0.8
370,154 - +1.2
370,159 + -0.5
370,159 + +1.3
370,159 + -0.5
370,160 - +0.4
370,160 - -1.1
370,160 - -0.5
370,160 - -2.1
370,160 - -0.2
370,160 - +0.2
370,160 - +0.4
370,226 + -0.7
370,226 + -0.1
370,226 + +0.0
370,227 - -1.3
370,227 - +0.3
370,334 + PfGW456L13_316 0.15 -0.7
370,334 + PfGW456L13_316 0.15 +0.3
370,334 + PfGW456L13_316 0.15 +0.0
370,334 + PfGW456L13_316 0.15 +0.3
370,334 + PfGW456L13_316 0.15 +0.8
370,334 + PfGW456L13_316 0.15 -0.1
370,334 + PfGW456L13_316 0.15 +0.1
370,334 + PfGW456L13_316 0.15 +1.2
370,334 + PfGW456L13_316 0.15 +0.2
370,334 + PfGW456L13_316 0.15 +0.7
370,335 - PfGW456L13_316 0.15 -0.5
370,335 - PfGW456L13_316 0.15 +0.4
370,335 - PfGW456L13_316 0.15 +0.5
370,335 - PfGW456L13_316 0.15 -1.0
370,335 - PfGW456L13_316 0.15 +0.4
370,335 - PfGW456L13_316 0.15 +0.0
370,335 - PfGW456L13_316 0.15 -0.3
370,432 + PfGW456L13_316 0.27 +1.0
370,432 + PfGW456L13_316 0.27 -0.4
370,432 + PfGW456L13_316 0.27 +0.4
370,433 - PfGW456L13_316 0.27 -0.6
370,433 - PfGW456L13_316 0.27 -0.7
370,433 - PfGW456L13_316 0.27 +0.0
370,442 + PfGW456L13_316 0.28 -0.2
370,442 + PfGW456L13_316 0.28 +0.4
370,442 + PfGW456L13_316 0.28 -1.0
370,442 + PfGW456L13_316 0.28 -0.3
370,442 + PfGW456L13_316 0.28 +0.4
370,442 + PfGW456L13_316 0.28 +0.5
370,442 + PfGW456L13_316 0.28 -0.0
370,442 + PfGW456L13_316 0.28 -0.1
370,443 - PfGW456L13_316 0.28 +0.2
370,443 - PfGW456L13_316 0.28 +1.2
370,443 - PfGW456L13_316 0.28 -0.4
370,443 - PfGW456L13_316 0.28 +0.6
370,443 - PfGW456L13_316 0.28 +0.6
370,649 + PfGW456L13_316 0.54 -0.2
370,650 - PfGW456L13_316 0.54 +0.3
370,674 - PfGW456L13_316 0.57 +0.4
370,772 + PfGW456L13_316 0.69 +0.4
370,773 - PfGW456L13_316 0.69 +0.6
370,773 - PfGW456L13_316 0.69 +1.1
370,868 + PfGW456L13_316 0.81 +1.5
370,868 + PfGW456L13_316 0.81 -0.4
370,868 + PfGW456L13_316 0.81 +0.6
370,868 + PfGW456L13_316 0.81 +0.2
370,869 - PfGW456L13_316 0.81 +0.6
370,870 + PfGW456L13_316 0.81 +0.5
370,870 + PfGW456L13_316 0.81 +0.2
370,870 + PfGW456L13_316 0.81 +0.3
370,871 - PfGW456L13_316 0.81 +1.1
370,871 - PfGW456L13_316 0.81 -1.4
370,871 - PfGW456L13_316 0.81 +1.1
371,014 - -0.1
371,031 + -1.6
371,031 + +0.3
371,032 - +0.8
371,032 - +0.5
371,092 - +1.6
371,092 - -0.6
371,380 - PfGW456L13_317 0.29 +0.6
371,563 + PfGW456L13_317 0.44 -0.6
371,563 + PfGW456L13_317 0.44 -0.3
371,604 + PfGW456L13_317 0.48 +0.7
371,683 + PfGW456L13_317 0.54 +0.4
371,683 + PfGW456L13_317 0.54 -1.5
371,683 + PfGW456L13_317 0.54 +0.2
371,684 - PfGW456L13_317 0.54 +0.1
371,684 - PfGW456L13_317 0.54 -0.6
371,685 + PfGW456L13_317 0.54 +0.8
371,685 + PfGW456L13_317 0.54 -1.4
371,685 + PfGW456L13_317 0.54 +0.2
371,686 - PfGW456L13_317 0.54 -2.2
371,686 - PfGW456L13_317 0.54 -0.2
371,686 - PfGW456L13_317 0.54 -0.8
371,686 - PfGW456L13_317 0.54 +1.6
371,686 - PfGW456L13_317 0.54 -0.8
371,686 - PfGW456L13_317 0.54 +0.2
371,686 - PfGW456L13_317 0.54 -0.7
371,686 - PfGW456L13_317 0.54 -2.2
371,686 - PfGW456L13_317 0.54 +0.8
371,707 - PfGW456L13_317 0.56 -0.7
371,707 - PfGW456L13_317 0.56 +1.2
371,707 - PfGW456L13_317 0.56 -0.5

Or see this region's nucleotide sequence