Strain Fitness in Pseudomonas sp. RS175 around PFR28_01700

Experiment: Ferulic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid (C) 2.5 mM
1,889,382	+		PFR28_01698	0.89	-0.3
1,889,470	-				-1.6
1,889,470	-				-1.0
1,889,470	-				+1.7
1,889,482	+				+0.2
1,889,482	+				+0.5
1,889,482	+				-0.4
1,889,483	-				+0.6
1,889,483	-				+0.7
1,889,483	-				-0.2
1,889,483	-				-0.3
1,889,485	+				+0.3
1,889,485	+				+0.9
1,889,485	+				-0.0
1,889,485	+				+0.6
1,889,485	+				+0.1
1,889,485	+				-0.9
1,889,486	-				-0.1
1,889,486	-				+0.5
1,889,486	-				-0.7
1,889,486	-				+1.7
1,889,486	-				+0.7
1,889,486	-				+3.6
1,889,486	-				+0.4
1,889,486	-				+0.4
1,889,486	-				+1.0
1,889,486	-				-1.6
1,889,491	+				+0.1
1,889,491	+				+0.8
1,889,491	+				-0.8
1,889,554	+				+0.4
1,889,555	-				-2.4
1,889,744	+				-0.6
1,889,744	+				+0.4
1,889,745	-				+0.3
1,889,754	+				+1.0
1,889,754	+				-0.6
1,889,754	+				-2.3
1,889,754	+				-1.3
1,889,754	+				+0.4
1,889,754	+				+0.9
1,889,755	-				-1.2
1,889,755	-				+1.0
1,889,755	-				+0.8
1,889,773	+				-0.2
1,889,834	+				-0.3
1,889,834	+				-0.3
1,889,834	+				-0.4
1,889,835	-				+2.3
1,889,835	-				-1.6
1,889,835	-				+0.0
1,889,847	+				-0.4
1,889,847	+				-1.0
1,889,847	+				+0.6
1,889,847	+				+0.3
1,889,848	-				+1.7
1,889,848	-				-1.0
1,889,945	+				-0.0
1,890,072	+				+0.2
1,890,085	+				-0.5
1,890,086	-				+1.1
1,890,086	-				-0.0
1,890,098	+				-0.1
1,890,099	-				-0.7
1,890,099	-				+0.7
1,890,109	+				+0.7
1,890,109	+				+0.8
1,890,109	+				-0.4
1,890,110	-				-0.6
1,890,150	+				+0.1
1,890,196	+				+3.5
1,890,196	+				+0.6
1,890,196	+				-0.8
1,890,197	-				+0.3
1,890,197	-				-1.5
1,890,197	-				+0.8
1,890,197	-				-0.1
1,890,301	+				-0.3
1,890,363	+				+0.4
1,890,364	-				+1.2
1,890,364	-				-0.6
1,890,364	-				+0.0
1,890,364	-				+0.6
1,890,364	-				-1.3
1,890,364	-				-0.7
1,890,364	-				+0.2
1,890,364	-				-0.3
1,890,364	-				+0.8
1,890,407	+		PFR28_01700	0.10	+0.5
1,890,407	+		PFR28_01700	0.10	-0.3
1,890,407	+		PFR28_01700	0.10	-0.6
1,890,407	+		PFR28_01700	0.10	-3.2
1,890,407	+		PFR28_01700	0.10	-1.0
1,890,407	+		PFR28_01700	0.10	-0.8
1,890,407	+		PFR28_01700	0.10	+0.7
1,890,407	+		PFR28_01700	0.10	-0.9
1,890,407	+		PFR28_01700	0.10	+0.4
1,890,407	+		PFR28_01700	0.10	-1.5
1,890,408	-		PFR28_01700	0.11	-0.3
1,890,408	-		PFR28_01700	0.11	+0.1
1,890,408	-		PFR28_01700	0.11	-0.1
1,890,408	-		PFR28_01700	0.11	-2.3
1,890,408	-		PFR28_01700	0.11	-1.3
1,890,408	-		PFR28_01700	0.11	-0.3
1,890,408	-		PFR28_01700	0.11	-0.0
1,890,408	-		PFR28_01700	0.11	-0.4
1,890,408	-		PFR28_01700	0.11	-0.9
1,890,408	-		PFR28_01700	0.11	-1.8
1,890,408	-		PFR28_01700	0.11	-0.2
1,890,408	-		PFR28_01700	0.11	+0.2
1,890,408	-		PFR28_01700	0.11	+0.4
1,890,408	-		PFR28_01700	0.11	-1.1
1,890,408	-		PFR28_01700	0.11	-0.3
1,890,408	-		PFR28_01700	0.11	-0.5
1,890,408	-		PFR28_01700	0.11	+0.5
1,890,408	-		PFR28_01700	0.11	+0.7
1,890,408	-		PFR28_01700	0.11	-0.0
1,890,408	-		PFR28_01700	0.11	-0.4
1,890,408	-		PFR28_01700	0.11	+0.3
1,890,410	-		PFR28_01700	0.11	-1.6
1,890,425	+		PFR28_01700	0.12	+0.2
1,890,425	+		PFR28_01700	0.12	-2.8
1,890,425	+		PFR28_01700	0.12	-0.3
1,890,425	+		PFR28_01700	0.12	+1.8
1,890,426	-		PFR28_01700	0.12	-1.0
1,890,499	+		PFR28_01700	0.20	-0.9
1,890,515	+		PFR28_01700	0.21	+1.2
1,890,515	+		PFR28_01700	0.21	-1.0
1,890,515	+		PFR28_01700	0.21	-1.8
1,890,515	+		PFR28_01700	0.21	-0.9
1,890,515	+		PFR28_01700	0.21	+0.0
1,890,516	-		PFR28_01700	0.22	-2.1
1,890,516	-		PFR28_01700	0.22	+3.5
1,890,516	-		PFR28_01700	0.22	-1.1
1,890,516	-		PFR28_01700	0.22	-0.0
1,890,516	-		PFR28_01700	0.22	-0.2
1,890,660	-		PFR28_01700	0.36	+0.5
1,890,710	+		PFR28_01700	0.41	-0.7
1,890,710	+		PFR28_01700	0.41	-1.2
1,890,711	-		PFR28_01700	0.42	+0.7
1,890,722	+		PFR28_01700	0.43	-0.2
1,890,778	-		PFR28_01700	0.48	-0.6
1,890,857	+		PFR28_01700	0.56	+0.0
1,890,892	+		PFR28_01700	0.60	-0.6
1,890,892	+		PFR28_01700	0.60	+1.0
1,890,914	+		PFR28_01700	0.62	-0.1
1,890,914	+		PFR28_01700	0.62	+0.9
1,890,914	+		PFR28_01700	0.62	-1.1
1,890,914	+		PFR28_01700	0.62	-0.4
1,890,914	+		PFR28_01700	0.62	+0.2
1,890,914	+		PFR28_01700	0.62	-0.5
1,890,914	+		PFR28_01700	0.62	-1.0
1,890,915	-		PFR28_01700	0.62	-0.0
1,890,915	-		PFR28_01700	0.62	-0.0
1,890,915	-		PFR28_01700	0.62	+0.4
1,890,915	-		PFR28_01700	0.62	+0.1
1,890,915	-		PFR28_01700	0.62	-1.4
1,890,938	+		PFR28_01700	0.65	-2.0
1,890,939	-		PFR28_01700	0.65	+0.4
1,890,939	-		PFR28_01700	0.65	+0.4
1,890,949	+		PFR28_01700	0.66	-1.0
1,890,949	+		PFR28_01700	0.66	-1.7
1,890,950	-		PFR28_01700	0.66	+0.2
1,890,950	-		PFR28_01700	0.66	-1.4
1,890,989	+		PFR28_01700	0.70	-0.8
1,890,989	+		PFR28_01700	0.70	-0.0
1,890,990	-		PFR28_01700	0.70	+0.2
1,891,172	+		PFR28_01700	0.89	+0.4
1,891,172	+		PFR28_01700	0.89	-3.1
1,891,217	-				-0.4
1,891,223	+				+0.5
1,891,223	+				-0.7
1,891,223	+				-0.3
1,891,223	+				-0.0
1,891,223	+				-0.4
1,891,224	-				-0.5
1,891,224	-				-1.0
1,891,224	-				+1.7
1,891,224	-				+0.3
1,891,224	-				-0.9
1,891,224	-				+2.3
1,891,226	+				+0.3
1,891,226	+				-1.8
1,891,226	+				-2.0
1,891,226	+				-0.2
1,891,227	-				+0.5
1,891,227	-				-0.2
1,891,227	-				-1.4
1,891,227	-				-0.4
1,891,227	-				-3.0
1,891,227	-				+0.3
1,891,399	-				+0.2
1,891,471	+				-0.8
1,891,536	-		PFR28_01701	0.10	-1.4
1,891,542	+		PFR28_01701	0.11	+0.1
1,891,555	+		PFR28_01701	0.11	-0.2
1,891,556	-		PFR28_01701	0.11	-0.5
1,891,556	-		PFR28_01701	0.11	-0.1
1,891,582	-		PFR28_01701	0.13	-0.1
1,891,906	+		PFR28_01701	0.29	+0.1
1,891,906	+		PFR28_01701	0.29	-0.3
1,891,906	+		PFR28_01701	0.29	-0.1
1,891,906	+		PFR28_01701	0.29	+0.9
1,891,906	+		PFR28_01701	0.29	+0.4
1,891,907	-		PFR28_01701	0.29	-0.2
1,891,907	-		PFR28_01701	0.29	-1.3
1,891,907	-		PFR28_01701	0.29	-0.3
1,892,143	-		PFR28_01701	0.41	-0.3
1,892,143	-		PFR28_01701	0.41	+0.1
1,892,143	-		PFR28_01701	0.41	-1.3
1,892,143	-		PFR28_01701	0.41	+0.0
1,892,145	+		PFR28_01701	0.41	+0.3
1,892,145	+		PFR28_01701	0.41	+0.1
1,892,146	-		PFR28_01701	0.41	-0.8
1,892,146	-		PFR28_01701	0.41	+0.5
1,892,164	+		PFR28_01701	0.42	+1.2
1,892,164	+		PFR28_01701	0.42	-1.2
1,892,164	+		PFR28_01701	0.42	-0.2
1,892,164	+		PFR28_01701	0.42	+0.5
1,892,164	+		PFR28_01701	0.42	-1.0
1,892,164	+		PFR28_01701	0.42	-1.8
1,892,164	+		PFR28_01701	0.42	+0.1
1,892,165	-		PFR28_01701	0.42	+0.0