Strain Fitness in Pseudomonas sp. RS175 around PFR28_00652

Experiment: Ferulic Acid (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00650 and PFR28_00651 are separated by 153 nucleotidesPFR28_00651 and PFR28_00652 are separated by 82 nucleotidesPFR28_00652 and PFR28_00653 are separated by 205 nucleotides PFR28_00650: PFR28_00650 - hypothetical protein, at 693,579 to 694,796 _00650 PFR28_00651: PFR28_00651 - Protein/nucleic acid deglycase 2, at 694,950 to 695,531 _00651 PFR28_00652: PFR28_00652 - hypothetical protein, at 695,614 to 695,958 _00652 PFR28_00653: PFR28_00653 - hypothetical protein, at 696,164 to 697,183 _00653 Position (kb) 695 696Strain fitness (log2 ratio) -2 -1 0 1 2 3at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.643 kb on + strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.644 kb on - strand, within PFR28_00650at 694.737 kb on + strandat 694.737 kb on + strandat 694.738 kb on - strandat 694.738 kb on - strandat 694.785 kb on + strandat 694.905 kb on - strandat 694.910 kb on + strandat 694.911 kb on - strandat 694.911 kb on - strandat 694.973 kb on - strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.986 kb on + strandat 694.998 kb on + strandat 694.998 kb on + strandat 694.999 kb on - strandat 694.999 kb on - strandat 695.124 kb on + strand, within PFR28_00651at 695.124 kb on + strand, within PFR28_00651at 695.124 kb on + strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.125 kb on - strand, within PFR28_00651at 695.126 kb on + strand, within PFR28_00651at 695.190 kb on + strand, within PFR28_00651at 695.190 kb on + strand, within PFR28_00651at 695.191 kb on - strand, within PFR28_00651at 695.386 kb on + strand, within PFR28_00651at 695.386 kb on + strand, within PFR28_00651at 695.386 kb on + strand, within PFR28_00651at 695.386 kb on + strand, within PFR28_00651at 695.386 kb on + strand, within PFR28_00651at 695.387 kb on - strand, within PFR28_00651at 695.387 kb on - strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.406 kb on + strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.407 kb on - strand, within PFR28_00651at 695.408 kb on + strand, within PFR28_00651at 695.409 kb on - strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.437 kb on + strand, within PFR28_00651at 695.438 kb on - strand, within PFR28_00651at 695.438 kb on - strand, within PFR28_00651at 695.438 kb on - strand, within PFR28_00651at 695.438 kb on - strand, within PFR28_00651at 695.522 kb on + strandat 695.522 kb on + strandat 695.537 kb on + strandat 695.538 kb on - strandat 695.538 kb on - strandat 695.542 kb on - strandat 695.575 kb on + strandat 695.576 kb on - strandat 695.576 kb on - strandat 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.710 kb on + strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.711 kb on - strand, within PFR28_00652at 695.780 kb on - strand, within PFR28_00652at 695.780 kb on - strand, within PFR28_00652at 695.780 kb on - strand, within PFR28_00652at 695.812 kb on + strand, within PFR28_00652at 695.812 kb on + strand, within PFR28_00652at 695.812 kb on + strand, within PFR28_00652at 695.812 kb on + strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.813 kb on - strand, within PFR28_00652at 695.863 kb on + strand, within PFR28_00652at 695.863 kb on + strand, within PFR28_00652at 695.863 kb on + strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 695.864 kb on - strand, within PFR28_00652at 696.126 kb on + strandat 696.126 kb on + strandat 696.127 kb on - strandat 696.127 kb on - strandat 696.127 kb on - strandat 696.127 kb on - strandat 696.165 kb on + strandat 696.165 kb on + strandat 696.166 kb on - strandat 696.264 kb on + strandat 696.264 kb on + strandat 696.265 kb on - strandat 696.265 kb on - strandat 696.306 kb on + strand, within PFR28_00653at 696.306 kb on + strand, within PFR28_00653at 696.307 kb on - strand, within PFR28_00653at 696.430 kb on - strand, within PFR28_00653at 696.444 kb on + strand, within PFR28_00653at 696.444 kb on + strand, within PFR28_00653at 696.445 kb on - strand, within PFR28_00653at 696.445 kb on - strand, within PFR28_00653at 696.445 kb on - strand, within PFR28_00653at 696.506 kb on + strand, within PFR28_00653at 696.506 kb on + strand, within PFR28_00653at 696.630 kb on + strand, within PFR28_00653at 696.630 kb on + strand, within PFR28_00653at 696.631 kb on - strand, within PFR28_00653at 696.750 kb on + strand, within PFR28_00653at 696.750 kb on + strand, within PFR28_00653at 696.750 kb on + strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.751 kb on - strand, within PFR28_00653at 696.764 kb on + strand, within PFR28_00653at 696.764 kb on + strand, within PFR28_00653at 696.765 kb on - strand, within PFR28_00653at 696.880 kb on - strand, within PFR28_00653at 696.882 kb on + strand, within PFR28_00653at 696.890 kb on - strand, within PFR28_00653

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM
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694,643 + PFR28_00650 0.87 +1.1
694,643 + PFR28_00650 0.87 -0.4
694,643 + PFR28_00650 0.87 +0.7
694,643 + PFR28_00650 0.87 +0.3
694,643 + PFR28_00650 0.87 -0.8
694,643 + PFR28_00650 0.87 -0.5
694,643 + PFR28_00650 0.87 +0.2
694,644 - PFR28_00650 0.87 +1.4
694,644 - PFR28_00650 0.87 +1.2
694,644 - PFR28_00650 0.87 -0.3
694,644 - PFR28_00650 0.87 +0.2
694,644 - PFR28_00650 0.87 -0.2
694,644 - PFR28_00650 0.87 -0.7
694,644 - PFR28_00650 0.87 -0.9
694,644 - PFR28_00650 0.87 +0.3
694,644 - PFR28_00650 0.87 -0.1
694,644 - PFR28_00650 0.87 -2.0
694,644 - PFR28_00650 0.87 -0.2
694,644 - PFR28_00650 0.87 +3.3
694,644 - PFR28_00650 0.87 -0.3
694,737 + +1.0
694,737 + +0.4
694,738 - -0.7
694,738 - +0.4
694,785 + -0.1
694,905 - +2.0
694,910 + -0.5
694,911 - +0.4
694,911 - +0.2
694,973 - +0.5
694,986 + -0.9
694,986 + +0.1
694,986 + -0.2
694,986 + +0.9
694,986 + -1.9
694,986 + +1.0
694,986 + -0.9
694,986 + +0.5
694,986 + +0.2
694,986 + -0.2
694,998 + +0.3
694,998 + -0.1
694,999 - +0.7
694,999 - +0.3
695,124 + PFR28_00651 0.30 +0.4
695,124 + PFR28_00651 0.30 -0.6
695,124 + PFR28_00651 0.30 +0.2
695,125 - PFR28_00651 0.30 -0.2
695,125 - PFR28_00651 0.30 -0.7
695,125 - PFR28_00651 0.30 +0.2
695,125 - PFR28_00651 0.30 -0.6
695,125 - PFR28_00651 0.30 -0.0
695,125 - PFR28_00651 0.30 -0.2
695,125 - PFR28_00651 0.30 +0.1
695,125 - PFR28_00651 0.30 -1.0
695,126 + PFR28_00651 0.30 +1.8
695,190 + PFR28_00651 0.41 +1.0
695,190 + PFR28_00651 0.41 -0.6
695,191 - PFR28_00651 0.41 +0.5
695,386 + PFR28_00651 0.75 +0.5
695,386 + PFR28_00651 0.75 +0.4
695,386 + PFR28_00651 0.75 +1.5
695,386 + PFR28_00651 0.75 +2.0
695,386 + PFR28_00651 0.75 +0.0
695,387 - PFR28_00651 0.75 -0.1
695,387 - PFR28_00651 0.75 +0.6
695,406 + PFR28_00651 0.78 -0.0
695,406 + PFR28_00651 0.78 -0.5
695,406 + PFR28_00651 0.78 +1.2
695,406 + PFR28_00651 0.78 +0.5
695,406 + PFR28_00651 0.78 +1.3
695,406 + PFR28_00651 0.78 -0.1
695,406 + PFR28_00651 0.78 +1.4
695,406 + PFR28_00651 0.78 +2.0
695,406 + PFR28_00651 0.78 +0.1
695,406 + PFR28_00651 0.78 +1.1
695,406 + PFR28_00651 0.78 +0.8
695,406 + PFR28_00651 0.78 -0.3
695,406 + PFR28_00651 0.78 +0.3
695,406 + PFR28_00651 0.78 +0.5
695,406 + PFR28_00651 0.78 +1.9
695,406 + PFR28_00651 0.78 -2.7
695,406 + PFR28_00651 0.78 -0.9
695,407 - PFR28_00651 0.79 +0.4
695,407 - PFR28_00651 0.79 -0.6
695,407 - PFR28_00651 0.79 +0.3
695,407 - PFR28_00651 0.79 -0.8
695,407 - PFR28_00651 0.79 -0.0
695,407 - PFR28_00651 0.79 -1.0
695,407 - PFR28_00651 0.79 -0.0
695,407 - PFR28_00651 0.79 +0.8
695,407 - PFR28_00651 0.79 +1.3
695,407 - PFR28_00651 0.79 +0.1
695,407 - PFR28_00651 0.79 -0.5
695,407 - PFR28_00651 0.79 +0.1
695,407 - PFR28_00651 0.79 +0.3
695,407 - PFR28_00651 0.79 +0.4
695,407 - PFR28_00651 0.79 -1.4
695,407 - PFR28_00651 0.79 -1.2
695,407 - PFR28_00651 0.79 -2.7
695,407 - PFR28_00651 0.79 +0.7
695,407 - PFR28_00651 0.79 +0.2
695,407 - PFR28_00651 0.79 +0.1
695,408 + PFR28_00651 0.79 -1.0
695,409 - PFR28_00651 0.79 -0.3
695,437 + PFR28_00651 0.84 -0.3
695,437 + PFR28_00651 0.84 +0.6
695,437 + PFR28_00651 0.84 +2.0
695,437 + PFR28_00651 0.84 +1.0
695,437 + PFR28_00651 0.84 +1.2
695,437 + PFR28_00651 0.84 -1.3
695,437 + PFR28_00651 0.84 -1.7
695,438 - PFR28_00651 0.84 +1.7
695,438 - PFR28_00651 0.84 -0.1
695,438 - PFR28_00651 0.84 -0.7
695,438 - PFR28_00651 0.84 +0.3
695,522 + +0.1
695,522 + -0.2
695,537 + +1.0
695,538 - +0.3
695,538 - -0.8
695,542 - +0.1
695,575 + -1.0
695,576 - +0.1
695,576 - +0.8
695,710 + PFR28_00652 0.28 -0.1
695,710 + PFR28_00652 0.28 -0.0
695,710 + PFR28_00652 0.28 -0.4
695,710 + PFR28_00652 0.28 -0.6
695,710 + PFR28_00652 0.28 +2.6
695,710 + PFR28_00652 0.28 -1.0
695,710 + PFR28_00652 0.28 -1.9
695,710 + PFR28_00652 0.28 -0.8
695,711 - PFR28_00652 0.28 -0.7
695,711 - PFR28_00652 0.28 -0.4
695,711 - PFR28_00652 0.28 +0.7
695,711 - PFR28_00652 0.28 -1.5
695,711 - PFR28_00652 0.28 -0.4
695,711 - PFR28_00652 0.28 -0.8
695,711 - PFR28_00652 0.28 +0.8
695,711 - PFR28_00652 0.28 -0.4
695,711 - PFR28_00652 0.28 -0.4
695,780 - PFR28_00652 0.48 -0.2
695,780 - PFR28_00652 0.48 +0.3
695,780 - PFR28_00652 0.48 -0.5
695,812 + PFR28_00652 0.57 -0.0
695,812 + PFR28_00652 0.57 -0.4
695,812 + PFR28_00652 0.57 -1.2
695,812 + PFR28_00652 0.57 -0.2
695,813 - PFR28_00652 0.58 -0.1
695,813 - PFR28_00652 0.58 +0.5
695,813 - PFR28_00652 0.58 -0.6
695,813 - PFR28_00652 0.58 -1.8
695,813 - PFR28_00652 0.58 -0.9
695,813 - PFR28_00652 0.58 -0.8
695,863 + PFR28_00652 0.72 -0.3
695,863 + PFR28_00652 0.72 +0.7
695,863 + PFR28_00652 0.72 -0.1
695,864 - PFR28_00652 0.72 -1.7
695,864 - PFR28_00652 0.72 +0.1
695,864 - PFR28_00652 0.72 -0.1
695,864 - PFR28_00652 0.72 -0.6
695,864 - PFR28_00652 0.72 -0.1
695,864 - PFR28_00652 0.72 -0.9
696,126 + +2.2
696,126 + -1.0
696,127 - +0.9
696,127 - +0.5
696,127 - -0.3
696,127 - -1.2
696,165 + +1.0
696,165 + -1.0
696,166 - -0.6
696,264 + -0.6
696,264 + -2.3
696,265 - -0.5
696,265 - -1.0
696,306 + PFR28_00653 0.14 +0.7
696,306 + PFR28_00653 0.14 -0.3
696,307 - PFR28_00653 0.14 -1.1
696,430 - PFR28_00653 0.26 +0.2
696,444 + PFR28_00653 0.27 -0.4
696,444 + PFR28_00653 0.27 +0.7
696,445 - PFR28_00653 0.28 -0.1
696,445 - PFR28_00653 0.28 +0.5
696,445 - PFR28_00653 0.28 -1.8
696,506 + PFR28_00653 0.34 +1.6
696,506 + PFR28_00653 0.34 +1.0
696,630 + PFR28_00653 0.46 +0.3
696,630 + PFR28_00653 0.46 -0.7
696,631 - PFR28_00653 0.46 +0.1
696,750 + PFR28_00653 0.57 +0.1
696,750 + PFR28_00653 0.57 +0.2
696,750 + PFR28_00653 0.57 -0.1
696,751 - PFR28_00653 0.58 -1.9
696,751 - PFR28_00653 0.58 -1.0
696,751 - PFR28_00653 0.58 -0.4
696,751 - PFR28_00653 0.58 -1.2
696,751 - PFR28_00653 0.58 -0.9
696,751 - PFR28_00653 0.58 +0.6
696,751 - PFR28_00653 0.58 -1.0
696,751 - PFR28_00653 0.58 +0.1
696,751 - PFR28_00653 0.58 -1.1
696,751 - PFR28_00653 0.58 +0.7
696,751 - PFR28_00653 0.58 +0.7
696,751 - PFR28_00653 0.58 -1.5
696,751 - PFR28_00653 0.58 +0.0
696,764 + PFR28_00653 0.59 -0.5
696,764 + PFR28_00653 0.59 -0.6
696,765 - PFR28_00653 0.59 -1.1
696,880 - PFR28_00653 0.70 +0.1
696,882 + PFR28_00653 0.70 -0.1
696,890 - PFR28_00653 0.71 -0.6

Or see this region's nucleotide sequence