Experiment: Ferulic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00495 and PFR28_00496 are separated by 44 nucleotides PFR28_00496 and PFR28_00497 are separated by 158 nucleotides PFR28_00497 and PFR28_00498 are separated by 191 nucleotides PFR28_00498 and PFR28_00499 are separated by 352 nucleotides
PFR28_00495: PFR28_00495 - hypothetical protein, at 530,215 to 531,774
_00495
PFR28_00496: PFR28_00496 - DNA base-flipping protein, at 531,819 to 532,172
_00496
PFR28_00497: PFR28_00497 - hypothetical protein, at 532,331 to 533,338
_00497
PFR28_00498: PFR28_00498 - Cold shock protein CapB, at 533,530 to 533,739
_00498
PFR28_00499: PFR28_00499 - dCTP deaminase, at 534,092 to 534,658
_00499
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 531.588 kb on - strand, within PFR28_00495 at 531.588 kb on - strand, within PFR28_00495 at 531.588 kb on - strand, within PFR28_00495 at 531.588 kb on - strand, within PFR28_00495 at 531.588 kb on - strand, within PFR28_00495 at 531.588 kb on - strand, within PFR28_00495 at 531.680 kb on + strand at 531.680 kb on + strand at 531.681 kb on - strand at 531.681 kb on - strand at 531.681 kb on - strand at 531.681 kb on - strand at 531.738 kb on - strand at 531.738 kb on - strand at 531.765 kb on + strand at 531.821 kb on - strand at 532.072 kb on + strand, within PFR28_00496 at 532.072 kb on + strand, within PFR28_00496 at 532.072 kb on + strand, within PFR28_00496 at 532.072 kb on + strand, within PFR28_00496 at 532.072 kb on + strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.073 kb on - strand, within PFR28_00496 at 532.114 kb on + strand, within PFR28_00496 at 532.114 kb on + strand, within PFR28_00496 at 532.114 kb on + strand, within PFR28_00496 at 532.204 kb on + strand at 532.205 kb on - strand at 532.209 kb on + strand at 532.209 kb on + strand at 532.210 kb on - strand at 532.210 kb on - strand at 532.210 kb on - strand at 532.210 kb on - strand at 532.217 kb on - strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.330 kb on + strand at 532.331 kb on - strand at 532.331 kb on - strand at 532.331 kb on - strand at 532.331 kb on - strand at 532.331 kb on - strand at 532.331 kb on - strand at 532.351 kb on - strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.356 kb on + strand at 532.357 kb on - strand at 532.357 kb on - strand at 532.357 kb on - strand at 532.424 kb on - strand at 532.475 kb on + strand, within PFR28_00497 at 532.476 kb on - strand, within PFR28_00497 at 532.476 kb on - strand, within PFR28_00497 at 532.536 kb on + strand, within PFR28_00497 at 532.537 kb on - strand, within PFR28_00497 at 532.557 kb on - strand, within PFR28_00497 at 532.727 kb on + strand, within PFR28_00497 at 532.757 kb on + strand, within PFR28_00497 at 532.758 kb on - strand, within PFR28_00497 at 532.820 kb on + strand, within PFR28_00497 at 532.820 kb on + strand, within PFR28_00497 at 532.820 kb on + strand, within PFR28_00497 at 532.820 kb on + strand, within PFR28_00497 at 532.820 kb on + strand, within PFR28_00497 at 532.821 kb on - strand, within PFR28_00497 at 532.858 kb on + strand, within PFR28_00497 at 532.874 kb on + strand, within PFR28_00497 at 532.875 kb on - strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.928 kb on + strand, within PFR28_00497 at 532.929 kb on - strand, within PFR28_00497 at 532.929 kb on - strand, within PFR28_00497 at 532.929 kb on - strand, within PFR28_00497 at 532.929 kb on - strand, within PFR28_00497 at 532.929 kb on - strand, within PFR28_00497 at 532.988 kb on + strand, within PFR28_00497 at 533.051 kb on + strand, within PFR28_00497 at 533.051 kb on + strand, within PFR28_00497 at 533.052 kb on - strand, within PFR28_00497 at 533.052 kb on - strand, within PFR28_00497 at 533.085 kb on - strand, within PFR28_00497 at 533.085 kb on - strand, within PFR28_00497 at 533.108 kb on + strand, within PFR28_00497 at 533.108 kb on + strand, within PFR28_00497 at 533.109 kb on - strand, within PFR28_00497 at 533.109 kb on - strand, within PFR28_00497 at 533.109 kb on - strand, within PFR28_00497 at 533.109 kb on - strand, within PFR28_00497 at 533.117 kb on + strand, within PFR28_00497 at 533.117 kb on + strand, within PFR28_00497 at 533.124 kb on + strand, within PFR28_00497 at 533.124 kb on + strand, within PFR28_00497 at 533.125 kb on - strand, within PFR28_00497 at 533.125 kb on - strand, within PFR28_00497 at 533.146 kb on + strand, within PFR28_00497 at 533.147 kb on - strand, within PFR28_00497 at 533.189 kb on + strand, within PFR28_00497 at 533.189 kb on + strand, within PFR28_00497 at 533.189 kb on + strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.190 kb on - strand, within PFR28_00497 at 533.195 kb on + strand, within PFR28_00497 at 533.195 kb on + strand, within PFR28_00497 at 533.195 kb on + strand, within PFR28_00497 at 533.195 kb on + strand, within PFR28_00497 at 533.195 kb on + strand, within PFR28_00497 at 533.196 kb on - strand, within PFR28_00497 at 533.196 kb on - strand, within PFR28_00497 at 533.196 kb on - strand, within PFR28_00497 at 533.196 kb on - strand, within PFR28_00497 at 533.219 kb on + strand, within PFR28_00497 at 533.220 kb on - strand, within PFR28_00497 at 533.220 kb on - strand, within PFR28_00497 at 533.220 kb on - strand, within PFR28_00497 at 533.220 kb on - strand, within PFR28_00497 at 533.220 kb on - strand, within PFR28_00497 at 533.337 kb on - strand at 533.354 kb on - strand at 533.424 kb on + strand at 533.481 kb on + strand at 533.481 kb on + strand at 533.532 kb on - strand at 533.532 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.543 kb on - strand at 533.648 kb on - strand, within PFR28_00498 at 533.648 kb on - strand, within PFR28_00498 at 533.648 kb on - strand, within PFR28_00498 at 533.745 kb on - strand at 533.745 kb on - strand at 533.763 kb on - strand at 533.823 kb on + strand at 533.824 kb on - strand at 533.824 kb on - strand at 533.824 kb on - strand at 533.824 kb on - strand at 533.848 kb on + strand at 533.848 kb on + strand at 533.848 kb on + strand at 533.848 kb on + strand at 533.848 kb on + strand at 533.848 kb on + strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.849 kb on - strand at 533.856 kb on - strand at 533.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM remove 531,588 - PFR28_00495 0.88 +3.4 531,588 - PFR28_00495 0.88 +1.3 531,588 - PFR28_00495 0.88 +1.7 531,588 - PFR28_00495 0.88 +0.2 531,588 - PFR28_00495 0.88 +0.5 531,588 - PFR28_00495 0.88 +1.3 531,680 + +1.0 531,680 + +0.5 531,681 - +1.0 531,681 - +2.0 531,681 - +2.0 531,681 - -0.1 531,738 - -0.3 531,738 - +2.3 531,765 + +0.8 531,821 - +0.5 532,072 + PFR28_00496 0.71 +0.5 532,072 + PFR28_00496 0.71 +2.0 532,072 + PFR28_00496 0.71 -1.0 532,072 + PFR28_00496 0.71 -1.5 532,072 + PFR28_00496 0.71 +0.8 532,073 - PFR28_00496 0.72 +0.5 532,073 - PFR28_00496 0.72 +0.2 532,073 - PFR28_00496 0.72 +1.2 532,073 - PFR28_00496 0.72 +0.2 532,073 - PFR28_00496 0.72 -0.1 532,073 - PFR28_00496 0.72 +0.0 532,073 - PFR28_00496 0.72 -0.7 532,073 - PFR28_00496 0.72 -1.1 532,114 + PFR28_00496 0.83 -0.3 532,114 + PFR28_00496 0.83 +0.8 532,114 + PFR28_00496 0.83 -0.3 532,204 + -0.1 532,205 - +0.1 532,209 + -2.0 532,209 + -1.9 532,210 - -1.7 532,210 - -1.9 532,210 - +0.8 532,210 - -0.3 532,217 - +0.2 532,330 + -0.1 532,330 + +2.0 532,330 + -0.8 532,330 + -1.1 532,330 + -0.8 532,330 + +0.4 532,330 + -0.5 532,330 + +0.3 532,330 + -0.3 532,331 - -0.4 532,331 - +1.0 532,331 - +0.4 532,331 - -1.5 532,331 - -3.7 532,331 - -0.9 532,351 - -0.6 532,356 + -0.6 532,356 + -0.2 532,356 + -0.1 532,356 + +0.0 532,356 + +1.3 532,356 + -0.4 532,356 + +2.0 532,357 - -0.1 532,357 - -0.6 532,357 - -3.0 532,424 - -0.8 532,475 + PFR28_00497 0.14 -1.3 532,476 - PFR28_00497 0.14 -0.4 532,476 - PFR28_00497 0.14 -0.2 532,536 + PFR28_00497 0.20 -0.2 532,537 - PFR28_00497 0.20 -0.6 532,557 - PFR28_00497 0.22 -1.3 532,727 + PFR28_00497 0.39 +1.4 532,757 + PFR28_00497 0.42 -1.1 532,758 - PFR28_00497 0.42 +1.3 532,820 + PFR28_00497 0.49 -0.1 532,820 + PFR28_00497 0.49 -0.6 532,820 + PFR28_00497 0.49 -0.0 532,820 + PFR28_00497 0.49 +0.5 532,820 + PFR28_00497 0.49 -1.6 532,821 - PFR28_00497 0.49 -0.6 532,858 + PFR28_00497 0.52 -0.3 532,874 + PFR28_00497 0.54 -1.4 532,875 - PFR28_00497 0.54 -0.8 532,928 + PFR28_00497 0.59 -2.0 532,928 + PFR28_00497 0.59 +0.4 532,928 + PFR28_00497 0.59 +1.4 532,928 + PFR28_00497 0.59 -0.3 532,928 + PFR28_00497 0.59 +0.7 532,928 + PFR28_00497 0.59 +2.0 532,929 - PFR28_00497 0.59 +0.2 532,929 - PFR28_00497 0.59 -0.2 532,929 - PFR28_00497 0.59 +0.5 532,929 - PFR28_00497 0.59 +0.1 532,929 - PFR28_00497 0.59 +0.1 532,988 + PFR28_00497 0.65 -1.3 533,051 + PFR28_00497 0.71 -1.8 533,051 + PFR28_00497 0.71 -0.5 533,052 - PFR28_00497 0.72 +0.5 533,052 - PFR28_00497 0.72 +0.9 533,085 - PFR28_00497 0.75 -0.1 533,085 - PFR28_00497 0.75 +0.3 533,108 + PFR28_00497 0.77 -0.0 533,108 + PFR28_00497 0.77 +0.8 533,109 - PFR28_00497 0.77 -0.1 533,109 - PFR28_00497 0.77 +1.9 533,109 - PFR28_00497 0.77 -0.7 533,109 - PFR28_00497 0.77 -0.7 533,117 + PFR28_00497 0.78 +0.8 533,117 + PFR28_00497 0.78 -1.1 533,124 + PFR28_00497 0.79 -1.7 533,124 + PFR28_00497 0.79 +1.2 533,125 - PFR28_00497 0.79 -0.5 533,125 - PFR28_00497 0.79 -0.9 533,146 + PFR28_00497 0.81 -0.4 533,147 - PFR28_00497 0.81 -0.5 533,189 + PFR28_00497 0.85 -0.4 533,189 + PFR28_00497 0.85 -0.9 533,189 + PFR28_00497 0.85 -2.0 533,190 - PFR28_00497 0.85 -0.5 533,190 - PFR28_00497 0.85 +0.2 533,190 - PFR28_00497 0.85 +2.0 533,190 - PFR28_00497 0.85 +0.0 533,190 - PFR28_00497 0.85 -0.6 533,190 - PFR28_00497 0.85 -0.8 533,190 - PFR28_00497 0.85 -1.6 533,190 - PFR28_00497 0.85 +2.6 533,190 - PFR28_00497 0.85 -1.7 533,195 + PFR28_00497 0.86 -1.9 533,195 + PFR28_00497 0.86 -2.4 533,195 + PFR28_00497 0.86 +1.0 533,195 + PFR28_00497 0.86 +0.6 533,195 + PFR28_00497 0.86 -0.4 533,196 - PFR28_00497 0.86 -0.3 533,196 - PFR28_00497 0.86 +2.8 533,196 - PFR28_00497 0.86 +0.6 533,196 - PFR28_00497 0.86 -0.5 533,219 + PFR28_00497 0.88 -0.9 533,220 - PFR28_00497 0.88 -0.1 533,220 - PFR28_00497 0.88 -0.9 533,220 - PFR28_00497 0.88 -0.4 533,220 - PFR28_00497 0.88 -1.2 533,220 - PFR28_00497 0.88 -1.4 533,337 - +0.1 533,354 - -0.4 533,424 + -0.4 533,481 + -0.8 533,481 + -0.1 533,532 - +0.7 533,532 - -0.7 533,536 - +0.3 533,536 - -0.3 533,536 - -0.4 533,536 - +1.4 533,536 - -0.1 533,536 - -0.9 533,536 - +0.6 533,543 - -0.4 533,543 - +1.0 533,543 - -0.1 533,543 - +0.1 533,543 - +0.4 533,543 - -1.5 533,543 - -0.4 533,543 - +0.1 533,648 - PFR28_00498 0.56 +0.0 533,648 - PFR28_00498 0.56 +2.3 533,648 - PFR28_00498 0.56 +0.3 533,745 - +0.1 533,745 - -0.5 533,763 - -0.0 533,823 + -0.5 533,824 - +2.0 533,824 - -0.8 533,824 - -0.1 533,824 - -0.5 533,848 + -1.1 533,848 + -0.3 533,848 + -1.1 533,848 + -1.7 533,848 + -1.0 533,848 + -2.4 533,849 - -0.3 533,849 - -1.3 533,849 - +0.1 533,849 - -1.2 533,849 - -1.0 533,849 - -0.4 533,849 - -1.2 533,856 - -1.7 533,896 + -2.0
Or see this region's nucleotide sequence