Experiment: Ferulic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00370 and PFR28_00371 are separated by 341 nucleotides PFR28_00371 and PFR28_00372 overlap by 1 nucleotides PFR28_00372 and PFR28_00373 are separated by 32 nucleotides PFR28_00373 and PFR28_00374 are separated by 9 nucleotides
PFR28_00370: PFR28_00370 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 405,727 to 406,404
_00370
PFR28_00371: PFR28_00371 - hypothetical protein, at 406,746 to 407,054
_00371
PFR28_00372: PFR28_00372 - hypothetical protein, at 407,054 to 407,914
_00372
PFR28_00373: PFR28_00373 - hypothetical protein, at 407,947 to 408,768
_00373
PFR28_00374: PFR28_00374 - hypothetical protein, at 408,778 to 409,476
_00374
Position (kb) 407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 406.402 kb on + strand at 406.403 kb on - strand at 406.482 kb on - strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.672 kb on + strand at 406.673 kb on - strand at 406.673 kb on - strand at 406.676 kb on + strand at 406.676 kb on + strand at 406.676 kb on + strand at 406.677 kb on - strand at 406.745 kb on + strand at 406.746 kb on - strand at 406.746 kb on - strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.753 kb on + strand at 406.753 kb on + strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.776 kb on + strand at 406.799 kb on + strand, within PFR28_00371 at 406.799 kb on + strand, within PFR28_00371 at 406.800 kb on - strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.989 kb on + strand, within PFR28_00371 at 406.989 kb on + strand, within PFR28_00371 at 406.990 kb on - strand, within PFR28_00371 at 406.990 kb on - strand, within PFR28_00371 at 407.046 kb on + strand at 407.046 kb on + strand at 407.047 kb on - strand at 407.047 kb on - strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.069 kb on + strand at 407.069 kb on + strand at 407.069 kb on + strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.111 kb on + strand at 407.111 kb on + strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.118 kb on - strand at 407.156 kb on + strand, within PFR28_00372 at 407.156 kb on + strand, within PFR28_00372 at 407.157 kb on - strand, within PFR28_00372 at 407.188 kb on + strand, within PFR28_00372 at 407.188 kb on + strand, within PFR28_00372 at 407.189 kb on - strand, within PFR28_00372 at 407.189 kb on - strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.389 kb on - strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.548 kb on + strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.549 kb on - strand, within PFR28_00372 at 407.670 kb on + strand, within PFR28_00372 at 407.671 kb on - strand, within PFR28_00372 at 407.671 kb on - strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.768 kb on + strand, within PFR28_00372 at 407.769 kb on - strand, within PFR28_00372 at 407.769 kb on - strand, within PFR28_00372 at 407.840 kb on + strand at 407.841 kb on - strand at 407.841 kb on - strand at 407.841 kb on - strand at 407.874 kb on + strand at 407.874 kb on + strand at 407.874 kb on + strand at 407.874 kb on + strand at 407.875 kb on - strand at 407.875 kb on - strand at 407.875 kb on - strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.876 kb on + strand at 407.877 kb on - strand at 407.877 kb on - strand at 407.877 kb on - strand at 407.877 kb on - strand at 407.877 kb on - strand at 408.141 kb on + strand, within PFR28_00373 at 408.142 kb on - strand, within PFR28_00373 at 408.142 kb on - strand, within PFR28_00373 at 408.319 kb on + strand, within PFR28_00373 at 408.319 kb on + strand, within PFR28_00373 at 408.320 kb on - strand, within PFR28_00373 at 408.320 kb on - strand, within PFR28_00373 at 408.320 kb on - strand, within PFR28_00373 at 408.427 kb on - strand, within PFR28_00373 at 408.493 kb on + strand, within PFR28_00373 at 408.493 kb on + strand, within PFR28_00373 at 408.494 kb on - strand, within PFR28_00373 at 408.494 kb on - strand, within PFR28_00373 at 408.494 kb on - strand, within PFR28_00373 at 408.661 kb on + strand, within PFR28_00373 at 408.661 kb on + strand, within PFR28_00373 at 408.794 kb on + strand at 408.794 kb on + strand at 408.794 kb on + strand at 408.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM remove 406,402 + -0.8 406,403 - -0.0 406,482 - -0.6 406,553 + +0.3 406,553 + -1.0 406,553 + -0.1 406,553 + +1.0 406,553 + +0.0 406,553 + -1.0 406,553 + +0.2 406,553 + +1.7 406,553 + +0.4 406,553 + -0.5 406,554 - +0.8 406,554 - +0.7 406,554 - +0.1 406,554 - -1.5 406,554 - +0.6 406,554 - +0.1 406,554 - +1.0 406,554 - +0.7 406,554 - +0.3 406,554 - +0.5 406,554 - -0.0 406,554 - +0.1 406,554 - -1.0 406,554 - +1.1 406,554 - -0.4 406,554 - -1.1 406,554 - -0.4 406,672 + +0.7 406,673 - -0.4 406,673 - -0.5 406,676 + +0.1 406,676 + +0.8 406,676 + -0.0 406,677 - -0.8 406,745 + -1.7 406,746 - -4.1 406,746 - -4.2 406,751 + +0.1 406,751 + +1.2 406,751 + -0.3 406,751 + +2.2 406,751 + +0.6 406,751 + +2.0 406,751 + -1.6 406,752 - -3.0 406,752 - -2.3 406,752 - -1.7 406,752 - -1.9 406,753 + -1.5 406,753 + -1.1 406,754 - -1.8 406,754 - -1.9 406,754 - -1.3 406,754 - -3.1 406,776 + -0.4 406,799 + PFR28_00371 0.17 -0.2 406,799 + PFR28_00371 0.17 -1.3 406,800 - PFR28_00371 0.17 -1.0 406,944 + PFR28_00371 0.64 +0.2 406,944 + PFR28_00371 0.64 -0.5 406,944 + PFR28_00371 0.64 -0.2 406,945 - PFR28_00371 0.64 -2.4 406,945 - PFR28_00371 0.64 -2.3 406,945 - PFR28_00371 0.64 -2.6 406,945 - PFR28_00371 0.64 -2.1 406,989 + PFR28_00371 0.79 -0.7 406,989 + PFR28_00371 0.79 +0.2 406,990 - PFR28_00371 0.79 -1.7 406,990 - PFR28_00371 0.79 -0.5 407,046 + -1.4 407,046 + -2.8 407,047 - -1.5 407,047 - -1.7 407,066 + -1.4 407,066 + -0.1 407,066 + +0.0 407,066 + -0.4 407,067 - -2.2 407,067 - -0.7 407,067 - -0.1 407,067 - -0.1 407,067 - +1.0 407,067 - +0.5 407,067 - -0.2 407,069 + +0.2 407,069 + -0.4 407,069 + +0.3 407,070 - -0.6 407,070 - -1.2 407,070 - +0.1 407,070 - -2.0 407,111 + -0.3 407,111 + -0.4 407,112 - -1.6 407,112 - -1.4 407,112 - -2.4 407,112 - -1.7 407,112 - -2.8 407,112 - -0.0 407,118 - -1.5 407,156 + PFR28_00372 0.12 +3.0 407,156 + PFR28_00372 0.12 -0.3 407,157 - PFR28_00372 0.12 -1.8 407,188 + PFR28_00372 0.16 -0.8 407,188 + PFR28_00372 0.16 +0.0 407,189 - PFR28_00372 0.16 -1.7 407,189 - PFR28_00372 0.16 -2.1 407,198 + PFR28_00372 0.17 -0.5 407,198 + PFR28_00372 0.17 +0.8 407,198 + PFR28_00372 0.17 -1.7 407,198 + PFR28_00372 0.17 +1.0 407,198 + PFR28_00372 0.17 -0.2 407,199 - PFR28_00372 0.17 -1.3 407,199 - PFR28_00372 0.17 -0.2 407,199 - PFR28_00372 0.17 +1.0 407,199 - PFR28_00372 0.17 +1.4 407,389 - PFR28_00372 0.39 -1.9 407,548 + PFR28_00372 0.57 +1.3 407,548 + PFR28_00372 0.57 +0.0 407,548 + PFR28_00372 0.57 -0.8 407,548 + PFR28_00372 0.57 +0.3 407,548 + PFR28_00372 0.57 +0.6 407,548 + PFR28_00372 0.57 -0.6 407,548 + PFR28_00372 0.57 -1.4 407,549 - PFR28_00372 0.57 -0.9 407,549 - PFR28_00372 0.57 +0.0 407,549 - PFR28_00372 0.57 -0.2 407,549 - PFR28_00372 0.57 -0.3 407,549 - PFR28_00372 0.57 +0.5 407,549 - PFR28_00372 0.57 -0.4 407,549 - PFR28_00372 0.57 -0.5 407,549 - PFR28_00372 0.57 -0.9 407,670 + PFR28_00372 0.72 +1.1 407,671 - PFR28_00372 0.72 +1.2 407,671 - PFR28_00372 0.72 -0.4 407,768 + PFR28_00372 0.83 -1.0 407,768 + PFR28_00372 0.83 +1.6 407,768 + PFR28_00372 0.83 -0.1 407,768 + PFR28_00372 0.83 +0.9 407,768 + PFR28_00372 0.83 +0.9 407,768 + PFR28_00372 0.83 -0.4 407,768 + PFR28_00372 0.83 +0.5 407,768 + PFR28_00372 0.83 +0.3 407,769 - PFR28_00372 0.83 +0.0 407,769 - PFR28_00372 0.83 -0.2 407,840 + -0.9 407,841 - +1.2 407,841 - +0.3 407,841 - -0.8 407,874 + -0.3 407,874 + +0.1 407,874 + -0.4 407,874 + +4.6 407,875 - -1.0 407,875 - +0.0 407,875 - -0.7 407,876 + -0.6 407,876 + -1.0 407,876 + +0.3 407,876 + +0.5 407,876 + +0.2 407,876 + +0.4 407,876 + -0.1 407,877 - -0.2 407,877 - -1.1 407,877 - +0.4 407,877 - +0.2 407,877 - +0.4 408,141 + PFR28_00373 0.24 -1.3 408,142 - PFR28_00373 0.24 -1.3 408,142 - PFR28_00373 0.24 -0.4 408,319 + PFR28_00373 0.45 -0.4 408,319 + PFR28_00373 0.45 -0.2 408,320 - PFR28_00373 0.45 -1.1 408,320 - PFR28_00373 0.45 -0.8 408,320 - PFR28_00373 0.45 +0.7 408,427 - PFR28_00373 0.58 -1.1 408,493 + PFR28_00373 0.66 +2.5 408,493 + PFR28_00373 0.66 +1.1 408,494 - PFR28_00373 0.67 +0.2 408,494 - PFR28_00373 0.67 +0.9 408,494 - PFR28_00373 0.67 +0.5 408,661 + PFR28_00373 0.87 -1.8 408,661 + PFR28_00373 0.87 -1.1 408,794 + -0.7 408,794 + -0.6 408,794 + +0.5 408,794 + +0.9
Or see this region's nucleotide sequence