Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF986

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF985 and GFF986 are separated by 12 nucleotidesGFF986 and GFF987 overlap by 4 nucleotides GFF985 - Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 169,445 to 170,617 GFF985 GFF986 - Putative membrane protein, at 170,630 to 171,091 GFF986 GFF987 - FIG00637915: hypothetical protein, at 171,088 to 171,759 GFF987 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1at 169.806 kb on - strand, within GFF985at 170.015 kb on - strand, within GFF985at 170.531 kb on + strandat 170.532 kb on - strandat 170.690 kb on - strand, within GFF986at 170.700 kb on + strand, within GFF986at 170.770 kb on - strand, within GFF986at 170.783 kb on + strand, within GFF986at 170.783 kb on + strand, within GFF986at 170.792 kb on - strand, within GFF986at 170.857 kb on + strand, within GFF986at 170.858 kb on - strand, within GFF986at 170.977 kb on + strand, within GFF986at 171.058 kb on + strandat 171.058 kb on + strandat 171.058 kb on + strandat 171.059 kb on - strandat 171.073 kb on + strandat 171.074 kb on - strandat 171.074 kb on - strandat 171.074 kb on - strandat 171.077 kb on + strandat 171.078 kb on - strandat 171.078 kb on - strandat 171.255 kb on + strand, within GFF987at 171.796 kb on + strandat 171.797 kb on - strandat 171.864 kb on + strandat 171.865 kb on - strandat 171.865 kb on - strandat 171.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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169,806 - GFF985 0.31 +0.2
170,015 - GFF985 0.49 +0.5
170,531 + +0.9
170,532 - +0.1
170,690 - GFF986 0.13 +0.4
170,700 + GFF986 0.15 -0.3
170,770 - GFF986 0.30 +0.4
170,783 + GFF986 0.33 +0.7
170,783 + GFF986 0.33 +0.2
170,792 - GFF986 0.35 +0.2
170,857 + GFF986 0.49 -0.3
170,858 - GFF986 0.49 +1.3
170,977 + GFF986 0.75 +1.7
171,058 + +0.3
171,058 + -2.1
171,058 + -0.5
171,059 - -1.1
171,073 + -0.3
171,074 - -2.2
171,074 - +0.6
171,074 - +0.9
171,077 + -0.0
171,078 - +0.5
171,078 - +1.1
171,255 + GFF987 0.25 +0.4
171,796 + -1.1
171,797 - +0.5
171,864 + -1.2
171,865 - -1.0
171,865 - +0.4
171,952 + +0.7

Or see this region's nucleotide sequence