Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF892 and GFF893 are separated by 0 nucleotides GFF893 and GFF894 overlap by 4 nucleotides GFF894 and GFF895 are separated by 60 nucleotides
GFF892 - lysosomal glucosyl ceramidase-like protein, at 72,365 to 73,708
GFF892
GFF893 - Inosose isomerase (EC 5.3.99.-), at 73,709 to 74,542
GFF893
GFF894 - FIG01046005: hypothetical protein, at 74,539 to 75,705
GFF894
GFF895 - 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain, at 75,766 to 77,697
GFF895
Position (kb)
74
75
76 Strain fitness (log2 ratio)
-1
0
1
2 at 73.592 kb on + strand at 73.592 kb on + strand at 73.592 kb on + strand at 73.592 kb on + strand at 73.640 kb on - strand at 73.678 kb on + strand at 73.679 kb on - strand at 73.687 kb on - strand at 73.799 kb on + strand, within GFF893 at 73.819 kb on + strand, within GFF893 at 73.820 kb on - strand, within GFF893 at 73.820 kb on - strand, within GFF893 at 73.846 kb on + strand, within GFF893 at 73.852 kb on - strand, within GFF893 at 73.888 kb on + strand, within GFF893 at 73.889 kb on - strand, within GFF893 at 73.902 kb on - strand, within GFF893 at 74.194 kb on - strand, within GFF893 at 74.418 kb on + strand, within GFF893 at 74.433 kb on - strand, within GFF893 at 74.532 kb on + strand at 74.541 kb on - strand at 74.541 kb on - strand at 74.618 kb on + strand at 74.647 kb on + strand at 74.833 kb on + strand, within GFF894 at 74.860 kb on + strand, within GFF894 at 75.114 kb on + strand, within GFF894 at 75.132 kb on - strand, within GFF894 at 75.270 kb on + strand, within GFF894 at 75.271 kb on - strand, within GFF894 at 75.450 kb on - strand, within GFF894 at 75.465 kb on + strand, within GFF894 at 75.597 kb on - strand at 75.635 kb on + strand at 75.862 kb on + strand at 75.986 kb on - strand, within GFF895 at 75.991 kb on + strand, within GFF895 at 75.991 kb on + strand, within GFF895 at 75.991 kb on + strand, within GFF895 at 75.991 kb on + strand, within GFF895 at 75.992 kb on - strand, within GFF895 at 75.992 kb on - strand, within GFF895 at 75.992 kb on - strand, within GFF895 at 76.013 kb on + strand, within GFF895 at 76.024 kb on - strand, within GFF895 at 76.058 kb on - strand, within GFF895 at 76.125 kb on - strand, within GFF895 at 76.128 kb on - strand, within GFF895 at 76.268 kb on + strand, within GFF895 at 76.269 kb on - strand, within GFF895 at 76.453 kb on - strand, within GFF895 at 76.498 kb on + strand, within GFF895 at 76.505 kb on - strand, within GFF895
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI remove 73,592 + -0.2 73,592 + +0.6 73,592 + +0.6 73,592 + -1.4 73,640 - +2.1 73,678 + -0.5 73,679 - -0.7 73,687 - +0.7 73,799 + GFF893 0.11 +0.5 73,819 + GFF893 0.13 +0.5 73,820 - GFF893 0.13 -0.1 73,820 - GFF893 0.13 -0.1 73,846 + GFF893 0.16 +0.5 73,852 - GFF893 0.17 -0.6 73,888 + GFF893 0.21 -0.3 73,889 - GFF893 0.22 +1.0 73,902 - GFF893 0.23 -0.3 74,194 - GFF893 0.58 -0.3 74,418 + GFF893 0.85 +0.4 74,433 - GFF893 0.87 +0.5 74,532 + -0.5 74,541 - -0.9 74,541 - +0.6 74,618 + +1.1 74,647 + +0.7 74,833 + GFF894 0.25 +1.3 74,860 + GFF894 0.28 +0.7 75,114 + GFF894 0.49 +0.4 75,132 - GFF894 0.51 +1.3 75,270 + GFF894 0.63 +0.1 75,271 - GFF894 0.63 -0.5 75,450 - GFF894 0.78 +0.4 75,465 + GFF894 0.79 +1.3 75,597 - +0.1 75,635 + -0.7 75,862 + +0.4 75,986 - GFF895 0.11 +0.2 75,991 + GFF895 0.12 +0.5 75,991 + GFF895 0.12 +1.9 75,991 + GFF895 0.12 -0.7 75,991 + GFF895 0.12 +0.0 75,992 - GFF895 0.12 +0.2 75,992 - GFF895 0.12 -0.4 75,992 - GFF895 0.12 +0.6 76,013 + GFF895 0.13 +1.1 76,024 - GFF895 0.13 -0.1 76,058 - GFF895 0.15 +0.7 76,125 - GFF895 0.19 +0.1 76,128 - GFF895 0.19 -0.3 76,268 + GFF895 0.26 +0.7 76,269 - GFF895 0.26 +0.2 76,453 - GFF895 0.36 +0.4 76,498 + GFF895 0.38 -0.7 76,505 - GFF895 0.38 -0.1
Or see this region's nucleotide sequence