Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF829

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF828 and GFF829 are separated by 78 nucleotidesGFF829 and GFF830 are separated by 102 nucleotides GFF828 - HflC protein, at 11,062 to 12,066 GFF828 GFF829 - Putative inner membrane protein YjeT (clustered with HflC), at 12,145 to 12,342 GFF829 GFF830 - Adenylosuccinate synthetase (EC 6.3.4.4), at 12,445 to 13,743 GFF830 Position (kb) 12 13Strain fitness (log2 ratio) -1 0 1 2at 11.371 kb on + strand, within GFF828at 11.372 kb on - strand, within GFF828at 11.558 kb on + strand, within GFF828at 11.559 kb on - strand, within GFF828at 11.652 kb on + strand, within GFF828at 11.731 kb on + strand, within GFF828at 11.739 kb on + strand, within GFF828at 11.869 kb on - strand, within GFF828at 12.131 kb on + strandat 12.133 kb on + strandat 12.134 kb on - strandat 12.317 kb on - strand, within GFF829at 12.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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11,371 + GFF828 0.31 -1.2
11,372 - GFF828 0.31 -0.9
11,558 + GFF828 0.49 -0.1
11,559 - GFF828 0.49 +2.1
11,652 + GFF828 0.59 -1.1
11,731 + GFF828 0.67 +0.7
11,739 + GFF828 0.67 -1.6
11,869 - GFF828 0.80 +0.7
12,131 + -0.4
12,133 + -0.1
12,134 - -1.7
12,317 - GFF829 0.87 +1.3
12,390 - -0.6

Or see this region's nucleotide sequence