Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4672

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4671 and GFF4672 overlap by 4 nucleotidesGFF4672 and GFF4673 overlap by 4 nucleotides GFF4671 - Phage terminase, large subunit, at 1,276 to 3,309 GFF4671 GFF4672 - FIG01047026: hypothetical protein, at 3,306 to 3,512 GFF4672 GFF4673 - Phage portal protein, at 3,509 to 5,056 GFF4673 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.451 kb on - strand, within GFF4671at 2.494 kb on + strand, within GFF4671at 2.834 kb on - strand, within GFF4671at 2.893 kb on + strand, within GFF4671at 2.893 kb on + strand, within GFF4671at 2.900 kb on + strand, within GFF4671at 2.965 kb on + strand, within GFF4671at 2.966 kb on - strand, within GFF4671at 3.016 kb on + strand, within GFF4671at 3.091 kb on + strand, within GFF4671at 3.333 kb on + strand, within GFF4672at 3.390 kb on - strand, within GFF4672at 3.585 kb on + strandat 3.707 kb on - strand, within GFF4673at 3.888 kb on - strand, within GFF4673at 3.890 kb on - strand, within GFF4673at 3.890 kb on - strand, within GFF4673at 3.890 kb on - strand, within GFF4673at 4.064 kb on - strand, within GFF4673at 4.082 kb on + strand, within GFF4673at 4.082 kb on + strand, within GFF4673at 4.278 kb on - strand, within GFF4673at 4.376 kb on + strand, within GFF4673

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
remove
2,451 - GFF4671 0.58 -0.0
2,494 + GFF4671 0.60 +0.7
2,834 - GFF4671 0.77 +0.4
2,893 + GFF4671 0.79 -0.3
2,893 + GFF4671 0.79 -1.0
2,900 + GFF4671 0.80 +0.3
2,965 + GFF4671 0.83 -0.1
2,966 - GFF4671 0.83 +0.1
3,016 + GFF4671 0.86 -2.1
3,091 + GFF4671 0.89 -0.5
3,333 + GFF4672 0.13 +0.5
3,390 - GFF4672 0.41 +0.6
3,585 + +0.2
3,707 - GFF4673 0.13 +0.5
3,888 - GFF4673 0.24 -1.0
3,890 - GFF4673 0.25 +0.3
3,890 - GFF4673 0.25 +1.1
3,890 - GFF4673 0.25 -2.6
4,064 - GFF4673 0.36 +0.5
4,082 + GFF4673 0.37 -0.2
4,082 + GFF4673 0.37 +0.6
4,278 - GFF4673 0.50 -1.5
4,376 + GFF4673 0.56 -0.5

Or see this region's nucleotide sequence