Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4575

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4574 and GFF4575 overlap by 32 nucleotidesGFF4575 and GFF4576 are separated by 157 nucleotidesGFF4576 and GFF4577 overlap by 4 nucleotides GFF4574 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 360,386 to 361,975 GFF4574 GFF4575 - Magnesium and cobalt efflux protein CorC, at 361,944 to 362,822 GFF4575 GFF4576 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 362,980 to 363,453 GFF4576 GFF4577 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 363,450 to 364,496 GFF4577 Position (kb) 361 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1at 362.039 kb on - strand, within GFF4575at 362.237 kb on - strand, within GFF4575at 362.237 kb on - strand, within GFF4575at 362.364 kb on - strand, within GFF4575at 362.607 kb on - strand, within GFF4575at 362.607 kb on - strand, within GFF4575at 362.853 kb on - strandat 362.871 kb on - strandat 362.871 kb on - strandat 362.873 kb on - strandat 362.924 kb on - strandat 363.006 kb on - strandat 363.796 kb on - strand, within GFF4577at 363.796 kb on - strand, within GFF4577

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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362,039 - GFF4575 0.11 -0.0
362,237 - GFF4575 0.33 -2.1
362,237 - GFF4575 0.33 -0.0
362,364 - GFF4575 0.48 -2.1
362,607 - GFF4575 0.75 -0.5
362,607 - GFF4575 0.75 -3.6
362,853 - -0.1
362,871 - +0.2
362,871 - +1.2
362,873 - +0.0
362,924 - +0.2
363,006 - -0.2
363,796 - GFF4577 0.33 +0.0
363,796 - GFF4577 0.33 +0.3

Or see this region's nucleotide sequence