Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4126

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4125 and GFF4126 are separated by 928 nucleotidesGFF4126 and GFF4127 are separated by 197 nucleotides GFF4125 - Mobile element protein, at 4,834 to 4,968 GFF4125 GFF4126 - FIG01047407: hypothetical protein, at 5,897 to 6,055 GFF4126 GFF4127 - putative inner membrane protein, at 6,253 to 7,575 GFF4127 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.966 kb on + strandat 4.984 kb on - strandat 5.081 kb on - strandat 5.271 kb on - strandat 5.391 kb on - strandat 5.409 kb on + strandat 5.450 kb on + strandat 5.526 kb on + strandat 5.538 kb on - strandat 5.538 kb on - strandat 5.567 kb on - strandat 5.567 kb on - strandat 5.744 kb on - strandat 5.768 kb on - strandat 6.018 kb on - strand, within GFF4126at 6.099 kb on - strandat 6.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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4,966 + -0.0
4,984 - -0.7
5,081 - -1.7
5,271 - -0.1
5,391 - -0.0
5,409 + -0.9
5,450 + -2.5
5,526 + -0.3
5,538 - -1.7
5,538 - +0.8
5,567 - +0.1
5,567 - -0.4
5,744 - -1.2
5,768 - -0.8
6,018 - GFF4126 0.76 +0.4
6,099 - -0.7
6,117 - +0.4

Or see this region's nucleotide sequence