Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3786

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3785 and GFF3786 are separated by 14 nucleotidesGFF3786 and GFF3787 are separated by 149 nucleotides GFF3785 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 53,740 to 54,408 GFF3785 GFF3786 - FIG00924762: possible membrane protein, at 54,423 to 55,565 GFF3786 GFF3787 - Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator, at 55,715 to 56,737 GFF3787 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.439 kb on + strandat 53.509 kb on + strandat 54.410 kb on + strandat 54.432 kb on - strandat 54.452 kb on - strandat 54.585 kb on - strand, within GFF3786at 54.599 kb on + strand, within GFF3786at 54.608 kb on + strand, within GFF3786at 54.722 kb on - strand, within GFF3786at 54.722 kb on - strand, within GFF3786at 55.174 kb on + strand, within GFF3786at 55.174 kb on + strand, within GFF3786at 56.482 kb on - strand, within GFF3787at 56.554 kb on + strand, within GFF3787at 56.554 kb on + strand, within GFF3787

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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53,439 + +0.3
53,509 + -0.2
54,410 + +1.2
54,432 - +0.4
54,452 - +1.0
54,585 - GFF3786 0.14 -0.7
54,599 + GFF3786 0.15 +0.0
54,608 + GFF3786 0.16 -2.0
54,722 - GFF3786 0.26 -1.6
54,722 - GFF3786 0.26 +0.3
55,174 + GFF3786 0.66 -0.2
55,174 + GFF3786 0.66 -0.9
56,482 - GFF3787 0.75 +0.1
56,554 + GFF3787 0.82 -1.6
56,554 + GFF3787 0.82 -1.3

Or see this region's nucleotide sequence