Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3757

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3756 and GFF3757 are separated by 1 nucleotidesGFF3757 and GFF3758 overlap by 1 nucleotides GFF3756 - Putative ABC transporter ATP-binding protein, at 23,107 to 24,696 GFF3756 GFF3757 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 24,698 to 25,723 GFF3757 GFF3758 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 25,723 to 26,817 GFF3758 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 23.785 kb on - strand, within GFF3756at 23.803 kb on - strand, within GFF3756at 23.942 kb on + strand, within GFF3756at 23.942 kb on + strand, within GFF3756at 24.061 kb on - strand, within GFF3756at 24.109 kb on + strand, within GFF3756at 24.166 kb on + strand, within GFF3756at 24.659 kb on - strandat 24.699 kb on + strandat 24.967 kb on + strand, within GFF3757at 24.968 kb on - strand, within GFF3757at 25.024 kb on - strand, within GFF3757at 25.408 kb on + strand, within GFF3757at 25.415 kb on - strand, within GFF3757at 25.424 kb on - strand, within GFF3757at 25.598 kb on - strand, within GFF3757at 25.650 kb on - strandat 25.724 kb on + strandat 25.814 kb on + strandat 26.147 kb on + strand, within GFF3758at 26.165 kb on + strand, within GFF3758at 26.223 kb on - strand, within GFF3758at 26.225 kb on + strand, within GFF3758at 26.293 kb on - strand, within GFF3758at 26.406 kb on + strand, within GFF3758at 26.490 kb on - strand, within GFF3758at 26.490 kb on - strand, within GFF3758

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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23,785 - GFF3756 0.43 +1.8
23,803 - GFF3756 0.44 +0.0
23,942 + GFF3756 0.53 +0.6
23,942 + GFF3756 0.53 -0.2
24,061 - GFF3756 0.60 -0.4
24,109 + GFF3756 0.63 -0.5
24,166 + GFF3756 0.67 +0.0
24,659 - +0.0
24,699 + -0.3
24,967 + GFF3757 0.26 -0.2
24,968 - GFF3757 0.26 +0.6
25,024 - GFF3757 0.32 +0.0
25,408 + GFF3757 0.69 -0.0
25,415 - GFF3757 0.70 +1.5
25,424 - GFF3757 0.71 -0.2
25,598 - GFF3757 0.88 +0.1
25,650 - -0.2
25,724 + +0.5
25,814 + +0.7
26,147 + GFF3758 0.39 +0.6
26,165 + GFF3758 0.40 +1.7
26,223 - GFF3758 0.46 -0.3
26,225 + GFF3758 0.46 +1.1
26,293 - GFF3758 0.52 -0.7
26,406 + GFF3758 0.62 +1.7
26,490 - GFF3758 0.70 +1.2
26,490 - GFF3758 0.70 -2.5

Or see this region's nucleotide sequence