Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2726

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2725 and GFF2726 overlap by 1 nucleotidesGFF2726 and GFF2727 are separated by 479 nucleotidesGFF2727 and GFF2728 are separated by 89 nucleotides GFF2725 - Tryptophan synthase beta chain (EC 4.2.1.20), at 248,697 to 249,890 GFF2725 GFF2726 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 249,890 to 250,696 GFF2726 GFF2727 - Conidiation-specific protein 10, at 251,176 to 251,358 GFF2727 GFF2728 - Protein yciF, at 251,448 to 251,951 GFF2728 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1at 249.093 kb on + strand, within GFF2725at 249.094 kb on - strand, within GFF2725at 249.094 kb on - strand, within GFF2725at 249.094 kb on - strand, within GFF2725at 249.252 kb on + strand, within GFF2725at 249.252 kb on + strand, within GFF2725at 249.253 kb on - strand, within GFF2725at 249.531 kb on + strand, within GFF2725at 249.532 kb on - strand, within GFF2725at 249.666 kb on + strand, within GFF2725at 249.667 kb on - strand, within GFF2725at 249.851 kb on + strandat 250.075 kb on + strand, within GFF2726at 250.096 kb on - strand, within GFF2726at 250.189 kb on - strand, within GFF2726at 250.221 kb on + strand, within GFF2726at 250.221 kb on + strand, within GFF2726at 250.222 kb on - strand, within GFF2726at 250.327 kb on + strand, within GFF2726at 250.328 kb on - strand, within GFF2726at 250.927 kb on - strandat 251.173 kb on - strandat 251.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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249,093 + GFF2725 0.33 -0.6
249,094 - GFF2725 0.33 +0.6
249,094 - GFF2725 0.33 -2.4
249,094 - GFF2725 0.33 -2.1
249,252 + GFF2725 0.46 +0.0
249,252 + GFF2725 0.46 +0.7
249,253 - GFF2725 0.47 +0.2
249,531 + GFF2725 0.70 -0.6
249,532 - GFF2725 0.70 +0.8
249,666 + GFF2725 0.81 +0.4
249,667 - GFF2725 0.81 +0.6
249,851 + -0.8
250,075 + GFF2726 0.23 +0.8
250,096 - GFF2726 0.26 -0.4
250,189 - GFF2726 0.37 -1.8
250,221 + GFF2726 0.41 +0.2
250,221 + GFF2726 0.41 +0.3
250,222 - GFF2726 0.41 -1.0
250,327 + GFF2726 0.54 -0.3
250,328 - GFF2726 0.54 +0.1
250,927 - +0.1
251,173 - -0.0
251,367 - +0.3

Or see this region's nucleotide sequence